View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10707_low_52 (Length: 251)
Name: NF10707_low_52
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_52 |
 | |
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| [»] scaffold0103 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 6314 - 6070
Alignment:
| Q |
7 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
6314 |
agaaccaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaa |
6215 |
T |
|
| Q |
107 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6214 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
6115 |
T |
|
| Q |
207 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6114 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
6070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 2633695 - 2633939
Alignment:
| Q |
7 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2633695 |
agaaccaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaa |
2633794 |
T |
|
| Q |
107 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2633795 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
2633894 |
T |
|
| Q |
207 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633895 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
2633939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 12082828 - 12083029
Alignment:
| Q |
5 |
ggagaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaa |
104 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||||||| |||| ||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| |
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|
| T |
12082828 |
ggagaaccaaaggttattatcattcaaatttcacacgtagccatatttatgagtcctgcacctaatgaaatcagttcaatattccaaagaagttagcaaa |
12082927 |
T |
|
| Q |
105 |
aatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaa |
204 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
12082928 |
aatctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacagcaaccaaattcttaaaattacttaatgatcaa |
12083027 |
T |
|
| Q |
205 |
gc |
206 |
Q |
| |
|
|| |
|
|
| T |
12083028 |
gc |
12083029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 871919 - 871786
Alignment:
| Q |
95 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
194 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| ||| ||||||||||||||||||| | ||||||||||| |
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|
| T |
871919 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaatgacaaagaaaaataacacaaacagcaaccaaagttttaaaattact |
871820 |
T |
|
| Q |
195 |
tggtgatcaagcaaatgatatccatggccatctt |
228 |
Q |
| |
|
||||| |||||||| || ||||||| ||||||| |
|
|
| T |
871819 |
tggtgttcaagcaactgctatccataaccatctt |
871786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 12083707 - 12083759
Alignment:
| Q |
199 |
gatcaagcaaatgatatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
12083707 |
gatcaagcaaatgatatctatggtcatctttaacatcaattgatcacaaacac |
12083759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 12808889 - 12808645
Alignment:
| Q |
7 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808889 |
agaaccaaaggtcattgtcactcaaatttcgcacgcaaccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
12808790 |
T |
|
| Q |
107 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808789 |
tctcactggtttaaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
12808690 |
T |
|
| Q |
207 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808689 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
12808645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 37433118 - 37433362
Alignment:
| Q |
7 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
106 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||| |||| || ||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
37433118 |
agaaccaaaggttattgtcattcaaatttcacacgtagacatatttatgattcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaa |
37433217 |
T |
|
| Q |
107 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
206 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| || ||| ||||||||| |
|
|
| T |
37433218 |
tctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacagacaacaaccaaattcttaaagttccttaatgatcaagc |
37433317 |
T |
|
| Q |
207 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37433318 |
aaatgatatccatggtcatctttaacatcaattgatcacaaacac |
37433362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 276290 - 276423
Alignment:
| Q |
95 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
194 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| ||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
276290 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaatgacaaagaaaaataacacaaacagcaaccaaagttttaaaattact |
276389 |
T |
|
| Q |
195 |
tggtgatcaagcaaatgatatccatggccatctt |
228 |
Q |
| |
|
||||| |||||||| || ||||||| ||||||| |
|
|
| T |
276390 |
tggtgttcaagcaactgctatccataaccatctt |
276423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 21838416 - 21838174
Alignment:
| Q |
7 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
106 |
Q |
| |
|
|||| ||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
21838416 |
agaaccaaaggttattgtcattcaaatttaacacgtagccatatttatgagtcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaa |
21838317 |
T |
|
| Q |
107 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
206 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| | ||||||| |
|
|
| T |
21838316 |
tctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacagcaaccaaattc-taaaattactt-atcatcaagc |
21838219 |
T |
|
| Q |
207 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21838218 |
aaatgatatccatggtcatctttaacatcaattgatcacaaacac |
21838174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 4806909 - 4807047
Alignment:
| Q |
112 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||| | |||||||||||| |
|
|
| T |
4806909 |
ctggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaacaaccaaattc-taaaattacttaatcatcaagcaaatg |
4807007 |
T |
|
| Q |
212 |
atatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4807008 |
atatccatggtcatctttaacatcaattgatcacaaacac |
4807047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 32447217 - 32447461
Alignment:
| Q |
7 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
106 |
Q |
| |
|
|||| ||||||| ||||||| |||||||| || | |||| ||| | ||||||||||| || ||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
32447217 |
agaaccaaaggttattgtcaatcaaatttaacatgtagccgtatctttgagtcctacaactaatgaaatcagttcaatatttcaaagaagttagcaaaaa |
32447316 |
T |
|
| Q |
107 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
206 |
Q |
| |
|
||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
32447317 |
tctaactgatttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaggaaccaaattcttaaaattacttaatgatcaagc |
32447416 |
T |
|
| Q |
207 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32447417 |
aaatgatatccatggtcatctttaacatcaattgatcacaaacac |
32447461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 27261031 - 27261275
Alignment:
| Q |
7 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
106 |
Q |
| |
|
|||| ||||||| ||||||| | |||||| || | |||| ||| | ||||||||||| || ||| ||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
27261031 |
agaaccaaaggttattgtcattaaaatttaacatgtagccgtatctttgagtcctacaactaatgaaataagttcaatattccaaagaagttggcaaaaa |
27261130 |
T |
|
| Q |
107 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
206 |
Q |
| |
|
||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
27261131 |
tctaactgatttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaggaaccaaattcttaaaattacttaatgatcaagc |
27261230 |
T |
|
| Q |
207 |
aaatgatatccatggccatctttaacatcaattgatcacaaacac |
251 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27261231 |
aaatgatatccatggtcatctttaacatcaattgatcacaaacac |
27261275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 238
Target Start/End: Original strand, 4637665 - 4637794
Alignment:
| Q |
109 |
tcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaa |
208 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||| ||| |||||||| ||| |
|
|
| T |
4637665 |
tcactggtttaaaaaaaaaataccaaaatcatgattgaatagcaaacaaaaataacacaaacagcaaccaaatttttaaaatttcttagtgatcaaacaa |
4637764 |
T |
|
| Q |
209 |
atgatatccatggccatctttaacatcaat |
238 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |
|
|
| T |
4637765 |
atgatatcaatggccatctttaagatcaat |
4637794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 25127261 - 25127392
Alignment:
| Q |
95 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
194 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| | | ||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
25127261 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaat--gacagaaaaataacacaaacagcaaccaaagttttaaaattact |
25127358 |
T |
|
| Q |
195 |
tggtgatcaagcaaatgatatccatggccatctt |
228 |
Q |
| |
|
||||| |||||||| || ||||||| ||||||| |
|
|
| T |
25127359 |
tggtgttcaagcaactgctatccataaccatctt |
25127392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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