View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_low_56 (Length: 249)

Name: NF10707_low_56
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_low_56
NF10707_low_56
[»] chr3 (2 HSPs)
chr3 (4-172)||(2004345-2004511)
chr3 (1-50)||(41708611-41708660)
[»] chr4 (1 HSPs)
chr4 (1-172)||(6739405-6739578)
[»] chr5 (1 HSPs)
chr5 (22-172)||(6360169-6360321)
[»] chr6 (3 HSPs)
chr6 (144-224)||(13821946-13822026)
chr6 (14-61)||(13821859-13821906)
chr6 (1-50)||(26331597-26331646)
[»] chr7 (1 HSPs)
chr7 (1-50)||(44266585-44266634)
[»] chr1 (2 HSPs)
chr1 (14-61)||(19492637-19492684)
chr1 (1-50)||(48743758-48743807)
[»] chr2 (1 HSPs)
chr2 (1-41)||(35786156-35786196)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 2004345 - 2004511
Alignment:
Q  4 gatcgtaacaaggatcataagatcccgcctaatagacaaaataataataaaagatactnnnnnnnnntaaccttccatnnnnnnnctttttatcaatcat 103  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |         || |||| |||       |||||||| ||||||    
T  2004345 gatcgtaacaaggatcgtaagatcccacctaatagacaaaataataataaaagatattaaaaaaa--taccctttcataaaaaaactttttattaatcat 2004442  T
Q  104 cattctcatattacttgagcatcttttagaaacttcatacaaataacaacacatcaatttcttaaacat 172  Q
    |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||    
T  2004443 cattctcatattacttgagcctcatttagaaacttcataaaaataacaacacatcaatttcttaaacat 2004511  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41708611 - 41708660
Alignment:
Q  1 taggatcgtaacaaggatcataagatcccgcctaatagacaaaataataa 50  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  41708611 taggatcgtaacaaggatcataagatcccacctaatagacaaaattataa 41708660  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 6739405 - 6739578
Alignment:
Q  1 taggatcgtaacaaggatcataagatcccgcctaatagacaaaataataataaaagatactnnnnnnnnntaaccttccatnnnnnnn---ctttttatc 97  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||         |||||||||||          ||||| ||     
T  6739405 taggatcgtaacaaggatcgtaagctcccacctaatagacaaaataataataaaagatactaaaaaaaa-taaccttccataaaaaaaaaacttttcatt 6739503  T
Q  98 aatcatcattctcatattacttgagcatcttttagaaacttcatacaaataacaacacatcaatttcttaaacat 172  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||    
T  6739504 aatcatcattctcatattacttgagcatcatttagaaacttcataaaaataacaacacaacaatttcttaaacat 6739578  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 6360321 - 6360169
Alignment:
Q  22 aagatcccgcctaatagacaaaataataataaaagatactnnnnnnnnn-taaccttccatnnnnnnn-ctttttatcaatcatcattctcatattactt 119  Q
    |||||||| |||||||||||||||||||||||||||||||          |||||||||||        |||||||| ||||||||||||||||||| ||    
T  6360321 aagatcccacctaatagacaaaataataataaaagatactaaaaaaaaaataaccttccataaaaaaaactttttattaatcatcattctcatattaatt 6360222  T
Q  120 gagcatcttttagaaacttcatacaaataacaacacatcaatttcttaaacat 172  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  6360221 gagcatcatttagaaacttcataaaaataacaacacatcaatttcttaaacat 6360169  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 13821946 - 13822026
Alignment:
Q  144 aaataacaacacatcaatttcttaaacatnnnnnnnnctagttcaacaagtcattcaagacattttgatcaagcccaacat 224  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  13821946 aaataacaacacatcaatttcttaaacataaaaaaaactagttcaacaagtcattcaagacattttgatcaagcccaacat 13822026  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 13821859 - 13821906
Alignment:
Q  14 aggatcataagatcccgcctaatagacaaaataataataaaagatact 61  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  13821859 aggatcgtaagatcccgcctaatagacaaaataataataaaagatact 13821906  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26331597 - 26331646
Alignment:
Q  1 taggatcgtaacaaggatcataagatcccgcctaatagacaaaataataa 50  Q
    ||||||||||||||||||| ||||||| | ||||||| ||||||| ||||    
T  26331597 taggatcgtaacaaggatcgtaagatctcacctaataaacaaaattataa 26331646  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44266585 - 44266634
Alignment:
Q  1 taggatcgtaacaaggatcataagatcccgcctaatagacaaaataataa 50  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  44266585 taggatcgtaacaaggatcgtaagatcccacctaatagacaaaattataa 44266634  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 19492637 - 19492684
Alignment:
Q  14 aggatcataagatcccgcctaatagacaaaataataataaaagatact 61  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||||    
T  19492637 aggatcgtaagatcccatctaatagacaaaataataataaaagatact 19492684  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48743758 - 48743807
Alignment:
Q  1 taggatcgtaacaaggatcataagatcccgcctaatagacaaaataataa 50  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||| ||||    
T  48743758 taggatggtaacaaggatcgtaagatcccacctaatagacaaaattataa 48743807  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35786196 - 35786156
Alignment:
Q  1 taggatcgtaacaaggatcataagatcccgcctaatagaca 41  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  35786196 taggatcgtaacaaggatcgtaagatcccacctaatagaca 35786156  T

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