View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_low_6 (Length: 449)

Name: NF10707_low_6
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_low_6
NF10707_low_6
[»] chr7 (3 HSPs)
chr7 (8-180)||(45632275-45632447)
chr7 (265-379)||(45632078-45632192)
chr7 (265-379)||(26643590-26643705)
[»] chr3 (3 HSPs)
chr3 (8-180)||(53159529-53159700)
chr3 (300-379)||(53161067-53161146)
chr3 (265-304)||(53159778-53159817)
[»] chr6 (2 HSPs)
chr6 (8-180)||(7368597-7368772)
chr6 (265-379)||(7368401-7368515)
[»] chr2 (2 HSPs)
chr2 (265-376)||(39905551-39905663)
chr2 (105-180)||(39905748-39905823)
[»] chr4 (1 HSPs)
chr4 (284-379)||(51032700-51032796)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 45632447 - 45632275
Alignment:
Q  8 gagtgagatgaataaggaaatcagaagtataaaaaagaaagaacatgagtaagnnnnnnnnttaaagaaacaaagggaagaagcccataatgtcaaaccg 107  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||||||        |||||||||||||||||| ||||||||||||||||||||    
T  45632447 gagtaagaagaataaggaaatcagaagtataaaaaagaaagaatatgagtaagaaaaagaattaaagaaacaaagggaaaaagcccataatgtcaaaccg 45632348  T
Q  108 gcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 180  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  45632347 gcgacactttaactgccacggtcactctagttattaaagaacaaatgaatgagtaaattaatggttttgtgat 45632275  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 45632192 - 45632078
Alignment:
Q  265 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  |||||| |||||||||||||||||||    
T  45632192 tgcaccatattgaattgttaccggttatggatcgttgtagcaactggaatgaagtcctagtgacaaaatacg-tctcttcatttttcagcaatagtactc 45632094  T
Q  364 acggttgttgttgatg 379  Q
    ||||||||||||||||    
T  45632093 acggttgttgttgatg 45632078  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 26643705 - 26643590
Alignment:
Q  265 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgacaaat-acgacctcttcctttttcagcaatagtactc 363  Q
    ||||||||||| | || ||||||||||||||||| | |||| | ||| |||||||| ||||| ||||  |||  ||||||| ||||||||||||||||||    
T  26643705 tgcaccatatttagttattaccggttatggatcgctttagcgactggtatgaagtcgtagtggcaaaacacggtctcttcccttttcagcaatagtactc 26643606  T
Q  364 acggttgttgttgatg 379  Q
    ||| ||||||||||||    
T  26643605 acgattgttgttgatg 26643590  T

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Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 53159529 - 53159700
Alignment:
Q  8 gagtgagatgaataaggaaatcagaagtataaaaaagaaagaacatgagtaagnnnnnnnnttaaagaaacaaagggaagaagcccataatgtcaaaccg 107  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||||||        | |||||||||||||||| ||||||||||||||||||||    
T  53159529 gagtaagaagaataaggaaatcagaagtataaaaaagaaagaatatgagtaagaaaaaaa-tcaaagaaacaaagggaaaaagcccataatgtcaaaccg 53159627  T
Q  108 gcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 180  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53159628 gcgacactttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 53159700  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 53161067 - 53161146
Alignment:
Q  300 tgtagcaattggaatgaagtcctagtgacaaa-tacgacctcttcctttttcagcaatagtactcacggttgttgttgatg 379  Q
    |||||||| | ||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||    
T  53161067 tgtagcaacttgaatgaagtcctagtgacaaaatacgtc-tcttcctttttcagcaataatactcacggttgttgttgatg 53161146  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 53159778 - 53159817
Alignment:
Q  265 tgcaccatattgaattgttaccggttatggatcgttgtag 304  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53159778 tgcaccatattgaattgttaccggttatggatcgttgtag 53159817  T

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Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 7368772 - 7368597
Alignment:
Q  8 gagtgagatgaataaggaaatcagaagtataaaaaagaaagaacatgagtaagnnnnnnnn---ttaaagaaacaaagggaagaagcccataatgtcaaa 104  Q
    |||| ||| ||||||||||||||||||||||||||||||| || |||||||||           ||||||||||||||||||||||||||||||||||||    
T  7368772 gagtaagaagaataaggaaatcagaagtataaaaaagaaacaatatgagtaagaaaaaataaaattaaagaaacaaagggaagaagcccataatgtcaaa 7368673  T
Q  105 ccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 180  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7368672 ccggcgacaccttaactgccacggtcactatagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 7368597  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 7368515 - 7368401
Alignment:
Q  265 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgacaaatacgacctcttcctttttcagcaatagtactca 364  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7368515 tgcaccatattgaattgttaccggttatgcatcgttgtagcaattggaatgaagtcctagtgacaaatacggcctcttcctttttcagcaatagtactca 7368416  T
Q  365 cggttgttgttgatg 379  Q
    |||||||||||||||    
T  7368415 cggttgttgttgatg 7368401  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 376
Target Start/End: Complemental strand, 39905663 - 39905551
Alignment:
Q  265 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactc 363  Q
    ||||||||||| ||||||||||||||||||||| || |||||| ||| |||||||||||||||| ||| ||| |||||||| |||||||   | ||||||    
T  39905663 tgcaccatatttaattgttaccggttatggatctttttagcaactggtatgaagtcctagtgacaaaacacggcctcttcccttttcagttgtggtactc 39905564  T
Q  364 acggttgttgttg 376  Q
    || ||||||||||    
T  39905563 accgttgttgttg 39905551  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 39905823 - 39905748
Alignment:
Q  105 ccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 180  Q
    |||||||||||||||||| ||||||||||| |||||| || || ||| ||||||||||||||||||||||||||||    
T  39905823 ccggcgacaccttaactgtcacggtcactccagttataaatgaccaactgaaagagtaaattaatgattttgtgat 39905748  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 379
Target Start/End: Original strand, 51032700 - 51032796
Alignment:
Q  284 accggttatggatcgttgtagcaattggaatgaagtcctagtgacaaat-acgacctcttcctttttcagcaatagtactcacggttgttgttgatg 379  Q
    ||||||||||||||||| |||| |  || |||||||  ||||| ||||  ||| |||||||| |||||||||||| |||||||  || |||||||||    
T  51032700 accggttatggatcgttttagcgaccggtatgaagttgtagtggcaaaacacggcctcttcccttttcagcaataatactcaccatttttgttgatg 51032796  T

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