View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_low_60 (Length: 241)

Name: NF10707_low_60
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_low_60
NF10707_low_60
[»] chr1 (24 HSPs)
chr1 (1-222)||(49767305-49767526)
chr1 (64-222)||(27551950-27552110)
chr1 (64-223)||(12251817-12251978)
chr1 (63-221)||(51839896-51840056)
chr1 (64-213)||(12896626-12896776)
chr1 (64-223)||(27550474-27550635)
chr1 (64-222)||(49768859-49769018)
chr1 (68-223)||(52010807-52010963)
chr1 (64-223)||(51841457-51841620)
chr1 (64-223)||(51340051-51340212)
chr1 (63-218)||(25352905-25353061)
chr1 (64-222)||(51338142-51338302)
chr1 (64-222)||(48218305-48218464)
chr1 (64-224)||(11396712-11396874)
chr1 (64-185)||(12898857-12898983)
chr1 (64-170)||(25351650-25351757)
chr1 (103-222)||(52882752-52882874)
chr1 (64-136)||(36249380-36249452)
chr1 (64-143)||(33709460-33709539)
chr1 (64-137)||(12368731-12368804)
chr1 (64-133)||(15053348-15053417)
chr1 (64-137)||(29232165-29232238)
chr1 (64-137)||(36362180-36362253)
chr1 (64-137)||(37987214-37987287)
[»] chr7 (27 HSPs)
chr7 (61-223)||(37107355-37107520)
chr7 (64-223)||(12622027-12622187)
chr7 (64-223)||(8081488-8081650)
chr7 (64-223)||(40303780-40303940)
chr7 (64-223)||(8832389-8832550)
chr7 (69-223)||(42974737-42974893)
chr7 (64-223)||(38595448-38595608)
chr7 (64-223)||(8082710-8082871)
chr7 (103-218)||(40304650-40304766)
chr7 (63-213)||(38592954-38593106)
chr7 (148-223)||(1065457-1065532)
chr7 (67-223)||(18798621-18798781)
chr7 (82-223)||(8833657-8833801)
chr7 (103-212)||(25270331-25270443)
chr7 (64-167)||(47110227-47110330)
chr7 (64-158)||(43309615-43309709)
chr7 (64-143)||(46044808-46044887)
chr7 (64-137)||(38875079-38875152)
chr7 (63-143)||(33624486-33624566)
chr7 (64-137)||(38198764-38198837)
chr7 (64-137)||(43831969-43832042)
chr7 (64-137)||(46043369-46043442)
chr7 (64-143)||(43830654-43830733)
chr7 (111-153)||(44168285-44168327)
chr7 (64-153)||(43083031-43083119)
chr7 (64-137)||(44166845-44166918)
chr7 (64-137)||(45957808-45957881)
[»] chr8 (21 HSPs)
chr8 (64-223)||(3865368-3865530)
chr8 (64-223)||(3866817-3866979)
chr8 (64-223)||(30133981-30134144)
chr8 (63-223)||(32243356-32243518)
chr8 (64-223)||(44893535-44893696)
chr8 (64-222)||(44894865-44895024)
chr8 (64-222)||(32244852-32245012)
chr8 (111-212)||(6243206-6243309)
chr8 (125-223)||(6244503-6244604)
chr8 (64-137)||(45023340-45023413)
chr8 (64-137)||(42816018-42816091)
chr8 (64-153)||(35368889-35368979)
chr8 (64-137)||(37705836-37705909)
chr8 (64-143)||(13324065-13324144)
chr8 (63-137)||(21136461-21136535)
chr8 (113-158)||(21575559-21575605)
chr8 (64-137)||(14835021-14835094)
chr8 (64-137)||(24452620-24452693)
chr8 (64-137)||(36062503-36062576)
chr8 (64-137)||(39308278-39308351)
chr8 (64-155)||(24451180-24451272)
[»] chr3 (22 HSPs)
chr3 (82-223)||(44557056-44557199)
chr3 (64-222)||(31992103-31992262)
chr3 (64-223)||(41926951-41927112)
chr3 (64-223)||(33476610-33476771)
chr3 (64-223)||(8574983-8575145)
chr3 (64-223)||(44555597-44555758)
chr3 (64-223)||(41928292-41928451)
chr3 (64-223)||(52700841-52701002)
chr3 (68-223)||(25233315-25233473)
chr3 (64-223)||(33475151-33475311)
chr3 (63-223)||(31990751-31990913)
chr3 (64-223)||(8576357-8576521)
chr3 (63-223)||(52702114-52702278)
chr3 (68-223)||(25353411-25353552)
chr3 (64-153)||(54185828-54185918)
chr3 (64-137)||(19831134-19831207)
chr3 (65-137)||(116626-116698)
chr3 (64-158)||(32942690-32942785)
chr3 (63-134)||(53246660-53246731)
chr3 (64-153)||(50614247-50614337)
chr3 (64-137)||(27867778-27867851)
chr3 (64-137)||(32944127-32944200)
[»] chr2 (13 HSPs)
chr2 (64-223)||(32317892-32318050)
chr2 (64-223)||(3117650-3117811)
chr2 (64-223)||(9112129-9112290)
chr2 (64-222)||(3118961-3119121)
chr2 (81-223)||(32319975-32320118)
chr2 (64-223)||(32319397-32319560)
chr2 (64-223)||(9111249-9111410)
chr2 (82-223)||(30982319-30982462)
chr2 (64-223)||(30982844-30983005)
chr2 (103-137)||(18673332-18673366)
chr2 (64-145)||(3104693-3104774)
chr2 (64-137)||(20721741-20721814)
chr2 (119-155)||(23788046-23788082)
[»] chr6 (11 HSPs)
chr6 (68-223)||(289813-289969)
chr6 (64-223)||(3912940-3913100)
chr6 (64-223)||(288679-288840)
chr6 (64-222)||(21108520-21108680)
chr6 (64-222)||(5086876-5087036)
chr6 (64-170)||(3914963-3915071)
chr6 (64-153)||(7852250-7852339)
chr6 (64-137)||(7855409-7855482)
chr6 (181-223)||(3914874-3914916)
chr6 (102-170)||(2546512-2546582)
chr6 (64-137)||(15119361-15119434)
[»] chr5 (22 HSPs)
chr5 (64-223)||(19333412-19333573)
chr5 (64-223)||(40272137-40272298)
chr5 (64-223)||(3407343-3407503)
chr5 (64-222)||(43211083-43211243)
chr5 (64-223)||(2263245-2263406)
chr5 (64-212)||(37811964-37812113)
chr5 (64-223)||(42258339-42258503)
chr5 (64-180)||(9168468-9168584)
chr5 (64-202)||(37813197-37813338)
chr5 (122-218)||(41617342-41617440)
chr5 (102-222)||(43209692-43209814)
chr5 (124-223)||(42645345-42645446)
chr5 (148-223)||(19332228-19332303)
chr5 (64-132)||(19193061-19193129)
chr5 (64-153)||(18951147-18951237)
chr5 (63-137)||(26864932-26865006)
chr5 (64-137)||(13921173-13921246)
chr5 (64-137)||(23312659-23312732)
chr5 (64-137)||(23318056-23318129)
chr5 (64-137)||(26866198-26866271)
chr5 (64-137)||(41140141-41140214)
chr5 (64-100)||(41617295-41617331)
[»] scaffold0005 (2 HSPs)
scaffold0005 (64-223)||(282614-282775)
scaffold0005 (64-223)||(283691-283851)
[»] chr4 (16 HSPs)
chr4 (64-223)||(34513486-34513647)
chr4 (64-218)||(28162914-28163070)
chr4 (64-223)||(44451765-44451927)
chr4 (64-223)||(28164176-28164337)
chr4 (68-221)||(34512234-34512392)
chr4 (64-207)||(13508548-13508692)
chr4 (64-223)||(48738188-48738349)
chr4 (64-145)||(35061327-35061408)
chr4 (64-137)||(45045203-45045276)
chr4 (64-155)||(53568855-53568947)
chr4 (63-142)||(25244118-25244197)
chr4 (64-137)||(10322838-10322911)
chr4 (64-137)||(13086449-13086522)
chr4 (64-137)||(31318075-31318148)
chr4 (65-153)||(25423188-25423276)
chr4 (64-143)||(53572040-53572119)
[»] scaffold0026 (2 HSPs)
scaffold0026 (64-132)||(100959-101027)
scaffold0026 (64-143)||(100862-100941)
[»] scaffold0651 (1 HSPs)
scaffold0651 (64-137)||(5522-5595)
[»] scaffold0097 (1 HSPs)
scaffold0097 (64-137)||(25570-25643)
[»] scaffold0093 (1 HSPs)
scaffold0093 (64-137)||(49276-49349)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 49767305 - 49767526
Alignment:
Q  1 cacatgggcttcacgatgcctttgtttgcctcattggttttcgttccttcatcaataatctaattaattatgtttaaagttcctataaataagcgagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||  ||    
T  49767305 cacatgggcttcacgatgcctttgtttgcctcattggttttcgttccttcatcaataatctaattaattatgtttaaggttgctataaataaacgaattt 49767404  T
Q  101 ttaacattgatccctatttaaattttattaaatttttcatcccaacattttttccgtttgtaagtttggtatttgccgttaaactgtgctgactaggcta 200  Q
    |||| |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||| |||||||    
T  49767405 ttaatattcgttcctatttaaattttattaaatttttcatcccaacattttttccgtttgtaagtttggcctttgccgtcaaactgtgctgattaggcta 49767504  T
Q  201 acagaatgctgactcagacatg 222  Q
    |||||||| |||||||||||||    
T  49767505 acagaatgttgactcagacatg 49767526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 27552110 - 27551950
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    |||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  27552110 ttaattatgtttaaggtccctataaataagcgagcttttaacattggtccctatttaaattttattaaatttttcatccccaacgtttttttccgtttgt 27552011  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    |||||||||  ||||||| |||||||| |||||||||||||||||||| ||||||||||||    
T  27552010 aagtttggtccttgccgtcaaactgtgttgactaggctaacagaatgcagactcagacatg 27551950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 12251978 - 12251817
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  12251978 ttaattatgtttaaagtccctataaataagcgagcttccaacattggtccctatttaaattttattaaatttttcatccccaacgtttttttccgtttgt 12251879  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| ||| |||||||||||||||||||||||| ||||||||||||||    
T  12251878 aagtttggtccttgccgtcaaattgtgctgactaggctaacagaatgttgactcagacatgc 12251817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 51839896 - 51840056
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc--aacattttttccgtttg 160  Q
    |||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||  |   |||||||||||||    
T  51839896 attaattatgtttaaagtccctataaataagcgagcttccaacattggtccctatttaaattttattaaatttttcatccccaatgtttttttccgtttg 51839995  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacat 221  Q
    |||||||| |  ||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  51839996 taagtttgatccttgccgtcaaactgtgttgactaggctaacaaaatgctgactcagacat 51840056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 64 - 213
Target Start/End: Original strand, 12896626 - 12896776
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacattttt-tccgtttgta 162  Q
    |||||||||||||| || |||| |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||    
T  12896626 ttaattatgtttaaggtccctacaaataagcaagcttttaacattggtccttatttaaattttattaaatttttcatcccaacatttttatctgtttgta 12896725  T
Q  163 agtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgac 213  Q
    |||||| |  ||||||| ||||||||||||||||||||||| |||||||||    
T  12896726 agtttgatccttgccgtcaaactgtgctgactaggctaacataatgctgac 12896776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 27550474 - 27550635
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc--aacattttttccgtttgt 161  Q
    ||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||  | | |||||||| |||||    
T  27550474 ttaattatgtttaaagtacctataaataagtgagcttccaacattgatccctatttaaattttattaaattttttatccctaacctttttttccatttgt 27550573  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| ||| |||||| ||||||||||||||||| ||||||||||||||    
T  27550574 aagtttggtccttgccgtcaaattgtgctcactaggctaacagaatgttgactcagacatgc 27550635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 49769018 - 49768859
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc-caacatttttt-ccgtttgt 161  Q
    ||||||||||||||||| ||| |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||    
T  49769018 ttaattatgtttaaagt-cctgtaaataagtgagcttctaacattggtccctatttaaattttattaaatttttcatcctcaacgtttttttccgtttgt 49768920  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    |||||||||  ||||||| ||| ||||||||||||| ||||| ||||||||||||||||||    
T  49768919 aagtttggtccttgccgtcaaattgtgctgactaggttaacaaaatgctgactcagacatg 49768859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 52010963 - 52010807
Alignment:
Q  68 ttatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacatt-ttttccgtttgtaagtt 166  Q
    |||||||||| || |||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  52010963 ttatgtttaaggtccctacaaataagcgagcttctaacattgctccctattaaaattttattaaatttttcaccccaacatttttttccttttgtaagtt 52010864  T
Q  167 tggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||  ||||||| |||||||||||| ||||||||||||||| |||| |||||||||    
T  52010863 tggtccttgccgtcaaactgtgctgattaggctaacagaatgttgacccagacatgc 52010807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 51841620 - 51841457
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttttt---ccgttt 159  Q
    |||||||||||||| || | || |||||||| |||||| ||||||  || ||||||||||||||| || ||||||||||| || |||||||   ||||||    
T  51841620 ttaattatgtttaaggtccttacaaataagcaagctttcaacatttgtcactatttaaattttataaattttttcatccccaatatttttttttccgttt 51841521  T
Q  160 gtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51841520 gtaagtttggtccttgccgtcaaactgtgctgactaggctaacagaatgctgactcagacatgc 51841457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 51340212 - 51340051
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaaca--ttttttccgtttgt 161  Q
    |||||||||||||| || | || | ||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||| |    |||||| |||||||    
T  51340212 ttaattatgtttaaggtccttacatataagcgagttttcagcattggtccctatttaaattttattaaatttttcatccccaatgttttttttcgtttgt 51340113  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  51340112 aagcttggtccttgccgtcaaactgtgctgactaggctaacagaatgctgactcagatatgc 51340051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 218
Target Start/End: Complemental strand, 25353061 - 25352905
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatc-ccaacat-tttttccgtttg 160  Q
    |||||||||||||||||| |||| ||||||||||||||  || |||| |||||||| |||||||||||||||||||||| ||||  | ||||||||||||    
T  25353061 attaattatgtttaaagtccctacaaataagcgagcttccaatattggtccctattaaaattttattaaatttttcatctccaatgtctttttccgtttg 25352962  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcaga 218  Q
    ||||||||||  |||||  ||||||||||||||||||||||| |||||||||| ||||    
T  25352961 taagtttggtccttgcc-ataaactgtgctgactaggctaacggaatgctgacccaga 25352905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 51338142 - 51338302
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatc-ccaa-cattttttccgtttgt 161  Q
    |||||||| |||||  | |||| ||||||||||| ||  ||||||| | ||||||||||||||||||||||||||||| ||||   |||||| || ||||    
T  51338142 ttaattatatttaagatccctacaaataagcgagtttccaacattggttcctatttaaattttattaaatttttcatctccaatgttttttttcgattgt 51338241  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    |||| ||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51338242 aagtctggtccttgccgtcaaactgtgctgactaggctaacagaatgctgactcagacatg 51338302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 48218464 - 48218305
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttcc-gtttgt 161  Q
    ||||||| ||||||||| |||  ||||||||||||||  | ||||| ||| ||||||||||||||||||||||| ||| | |||||||||| | ||| ||    
T  48218464 ttaattaagtttaaagt-cctgcaaataagcgagcttccagcattggtccttatttaaattttattaaattttttatctcgaacattttttgctgttggt 48218366  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    ||||| |||  ||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  48218365 aagttaggtcattgccgtcaaactgtgctgactagactaacagaatgctgacttagacatg 48218305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 11396712 - 11396874
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    ||||||||||||||||| |||| ||| |||||||||| ||| |||| || ||| | |||||||| |||||||||||| ||||||  |||||| | |||||    
T  11396712 ttaattatgtttaaagtccctacaaacaagcgagcttctaatattggtctctactaaaattttaataaatttttcatccccaacgttttttttcatttgt 11396811  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgct 224  Q
    |||||||||  || |||| ||| ||||||| |||||||||||||||||||||  |||||||||    
T  11396812 aagtttggtccttaccgtcaaattgtgctgcctaggctaacagaatgctgaccaagacatgct 11396874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 12898983 - 12898857
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttc----cgtt 158  Q
    |||||||||||||| || |||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||| ||| ||||||     ||||    
T  12898983 ttaattatgtttaaggtccctataaataagcgagcttccaacattggttcctatttaaattttattaaatttttcatccccaactttttttgttttcgtt 12898884  T
Q  159 tgtaagtttggtatttgccgttaaact 185  Q
    ||||||||||||  ||||||| |||||    
T  12898883 tgtaagtttggtcattgccgtcaaact 12898857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 25351650 - 25351757
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttca-tcccaa-cattttttccgtttgt 161  Q
    |||||||||||||| || |||| |||||| |||||||  ||||||| |||||||| |||||||||||||||||| | ||||||   ||||||||||||||    
T  25351650 ttaattatgtttaa-gtccctacaaataaacgagcttccaacattggtccctattaaaattttattaaattttttattcccaatgtttttttccgtttgt 25351748  T
Q  162 aagtttggt 170  Q
    |||||||||    
T  25351749 aagtttggt 25351757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 52882874 - 52882752
Alignment:
Q  103 aacattgatccctatttaaattttattaaatttttcatcccaacattttttccgtttgtaagtttg---gtatttgccgttaaactgtgctgactaggct 199  Q
    ||||||| ||| |||||| ||||||||||||||||||||||||| |||||  ||| ||||||||||    | ||| |||| |||||| || ||||||| |    
T  52882874 aacattggtccatatttagattttattaaatttttcatcccaacgtttttatcgtgtgtaagtttgatcctttttaccgtcaaactgcgccgactaggtt 52882775  T
Q  200 aacagaatgctgactcagacatg 222  Q
    |||||||| |||||| |||||||    
T  52882774 aacagaatactgacttagacatg 52882752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 36249452 - 36249380
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttt 136  Q
    |||||||||||| ||||||||||||||| ||| | ||| ||||||  |||||| |||||||||||||||||||    
T  36249452 ttaattatgttttaagttcctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttt 36249380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 33709539 - 33709460
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc 143  Q
    |||||||||||| | || |||||||||| ||| | || ||| |||  |||||| |||||||||||||||||||| |||||    
T  33709539 ttaattatgttttaggtccctataaataggcgtgtttctaatattagtccctacttaaattttattaaatttttgatccc 33709460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 12368804 - 12368731
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  12368804 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaattttt 12368731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 15053348 - 15053417
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaat 133  Q
    |||||||||||| | || |||||||||| ||| | ||| ||||||  |||||| ||||||||||||||||    
T  15053348 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaat 15053417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 29232238 - 29232165
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| |||   ||  |||||| ||||||| ||||||||||||||||||||    
T  29232238 ttaattatgttttaggtccctataaataggcgtatttccaacattaatccctacttaaattttattaaattttt 29232165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 36362180 - 36362253
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | |||| |||||||| ||  | ||  |||||| ||||| ||||||||||||||||||||||    
T  36362180 ttaattatgttttaggttcttataaataggcatgtttccaacattaatccccatttaaattttattaaattttt 36362253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 37987287 - 37987214
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  37987287 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaattttt 37987214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 37107355 - 37107520
Alignment:
Q  61 taattaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttca-tcccaac--attttttccgt 157  Q
    ||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||   ||||||||||    
T  37107355 taattaattatgtttaaggtccctataaataagcgagtttttaacattggtccctatttaaattttattaaatttttcattcccaacgttttttttccgt 37107454  T
Q  158 ttgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  37107455 ttgtaagtttggtccttgccgtcaaactgtgttgactaggctaacagaatgctgactcagacatgc 37107520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 12622187 - 12622027
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc-caa-cattttttccgtttgt 161  Q
    |||||||| ||||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||   ||||||||||||||    
T  12622187 ttaattatctttaa-gtccctataaataagcgagctttcaacattggtccctatttaaattttattaaatttttcatcctcaatgtttttttccgtttgt 12622089  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  12622088 aagtttggtccttgccgtcaaactgtgctgactaggctaacaaaatgctgactcagacatgc 12622027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 8081488 - 8081650
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaaca---ttttttccgtttg 160  Q
    |||||||||||||| || |||| ||||||||||||||  ||||||| |||||||| |||||||||||||||||||||||| | |   |||||||||||||    
T  8081488 ttaattatgtttaaggtccctacaaataagcgagcttcaaacattggtccctattaaaattttattaaatttttcatccccaaagttttttttccgtttg 8081587  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||||  ||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  8081588 taagtttggtccttgccgtcaaactgtgctgactaggctaacggaatgctgacccagacatgc 8081650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 40303780 - 40303940
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacattttttccgtttgta 162  Q
    |||||||||||||| ||||||| |||||||| |||||  ||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||| ||    
T  40303780 ttaattatgtttaaggttcctacaaataagcaagcttccaacattggtccctatttaaattttattaaatttttcatccccaacgttttttccattttta 40303879  T
Q  163 agtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||  ||||||| ||||||||| ||||||||||||||||||||||| ||| |||||    
T  40303880 agtttggtccttgccgtcaaactgtgcagactaggctaacagaatgctgacccaggcatgc 40303940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 8832389 - 8832550
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttt-ttccgtttgt 161  Q
    |||||||||||||| || |||| ||||||| |||||| ||| |||| |||||||| |||||||||||||||||||||||| ||| |||| ||||||||||    
T  8832389 ttaattatgtttaaggtccctacaaataagagagcttctaaaattggtccctattaaaattttattaaatttttcatcccgaacgtttttttccgtttgt 8832488  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  8832489 aagtttggtccttgccgtcaaactgtgctgactaggctaacggaatgctgacccagacatgc 8832550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 42974893 - 42974737
Alignment:
Q  69 tatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaa--cattttttccgtttgtaagtt 166  Q
    |||||||||  | |||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |  | |||||||||||||||||||    
T  42974893 tatgtttaagatccctacaaataagcgagcttctaacattggtccctattaaaattttattaaatttttcatccccaacctttttttccgtttgtaagtt 42974794  T
Q  167 tggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||| |||||||| |||| ||||||||||||||||| |||||||||| |||||||||    
T  42974793 tggtttttgccgtcaaacagtgctgactaggctaacggaatgctgacccagacatgc 42974737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 38595608 - 38595448
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttccgtttgta 162  Q
    |||||||||||||| || |||| ||||||| ||||||  |||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||    
T  38595608 ttaattatgtttaaggtccctacaaataagtgagcttccaacattgatccctattaaaattatattaaatttttcatccccaacgttttttccgtttgta 38595509  T
Q  163 agtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||| |||  ||||||| |||||||||||||||||||||| ||||||||||  ||||||||    
T  38595508 agttcggtccttgccgtcaaactgtgctgactaggctaacggaatgctgaccaagacatgc 38595448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 8082871 - 8082710
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    ||||||||||||||  | |||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||  ||||||||||||||    
T  8082871 ttaattatgtttaagatccctacaaataagcgagctttcaacattggtccctattaaaattttattaaatttttcatccccaacgtttttttccgtttgt 8082772  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| |||||||||||| ||||||||  |||||||||| |||||||||    
T  8082771 aagtttggtccttgccgtcaaactgtgctgattaggctaaaggaatgctgacccagacatgc 8082710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 40304766 - 40304650
Alignment:
Q  103 aacattgatccctatttaaattttattaaatttttcatcccaacattttt-tccgtttgtaagtttggtatttgccgttaaactgtgctgactaggctaa 201  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||||||| |||||||| ||||||||||||    
T  40304766 aacattggtccctatttaaattttattaaatttttcatcccaacgtttttatccgtttgtaagtttggtccttgccgtcaaactgtgttgactaggctaa 40304667  T
Q  202 cagaatgctgactcaga 218  Q
    |||||||||||| ||||    
T  40304666 cagaatgctgacccaga 40304650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 38592954 - 38593106
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc-caac-attttttccgtttg 160  Q
    ||||||||||||||| || |||| ||||||| |||||||||| ||||||||||  | ||||||||||||| ||||||||| ||||  |||||||||||||    
T  38592954 attaattatgtttaaggtccctacaaataagtgagcttttaatattgatccctgctaaaattttattaaaattttcatcctcaacgtttttttccgtttg 38593053  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgac 213  Q
    ||||||||||  || |||| |||||||||| | ||||||||||||||||||||    
T  38593054 taagtttggtccttaccgtcaaactgtgctaattaggctaacagaatgctgac 38593106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 1065457 - 1065532
Alignment:
Q  148 ttttttccgtttgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1065457 ttttttccgtttgtaagtttggtctttgccgtcaaactgtgctgactaggctaacagaatgctgactcagacatgc 1065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 18798621 - 18798781
Alignment:
Q  67 attatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttc---cgtttgta 162  Q
    ||||||||||| || |||  |||||||| |||||  ||||||| || |||||||||||||||||||||||||||||| ||||||||||    | ||||||    
T  18798621 attatgtttaaggtccctgcaaataagcaagcttccaacattggtctctatttaaattttattaaatttttcatccccaacattttttttttcatttgta 18798720  T
Q  163 agtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||| ||| || ||||||    
T  18798721 agtttggtccttgccgttaaactgtgttgattaggctaacagaatgcggacccatacatgc 18798781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 8833801 - 8833657
Alignment:
Q  82 cctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttttt--ccgtttgtaagtttggtatttgccg 178  Q
    |||| ||||| | ||||||  |||||||||||||||| |||||||||||||||||||||||| ||| ||||||  |||||||||||||||||  |||||     
T  8833801 cctacaaatatgtgagcttccaacattgatccctattaaaattttattaaatttttcatccccaacgttttttttccgtttgtaagtttggtccttgcca 8833702  T
Q  179 ttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    | |||||||||| ||||||||||| |||||||||| ||| |||||    
T  8833701 tcaaactgtgctaactaggctaacggaatgctgacccaggcatgc 8833657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 25270331 - 25270443
Alignment:
Q  103 aacattgatccctatttaaattttattaaattttt-catccc-aacattttt-tccgtttgtaagtttggtatttgccgttaaactgtgctgactaggct 199  Q
    ||||||||||| ||||||||||||||||||||||| |||||| ||| ||||| ||||||||||||||| ||  ||||||| ||||||||||||||||| |    
T  25270331 aacattgatccttatttaaattttattaaattttttcatccccaacgtttttatccgtttgtaagtttagttattgccgtcaaactgtgctgactaggtt 25270430  T
Q  200 aacagaatgctga 212  Q
    |||| ||||||||    
T  25270431 aacataatgctga 25270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 47110227 - 47110330
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacattttttccgtttgtaa 163  Q
    |||||||||||||| |||||||||||||| |  | ||| |||||| ||||||| |||||||||  |||||||||  ||||||| |||||  |||||||||    
T  47110227 ttaattatgtttaaggttcctataaataaacatgttttgaacattaatccctacttaaattttcataaatttttagtcccaacgtttttcacgtttgtaa 47110326  T
Q  164 gttt 167  Q
    ||||    
T  47110327 gttt 47110330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 43309709 - 43309615
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacattttttccgtt 158  Q
    ||||| |||||||| || |||||||||| ||| | ||| |||||| ||| ||| |||||||||||||||||||| ||||||||  ||||||||||    
T  43309709 ttaatcatgtttaaggtccctataaataggcgtgttttcaacattaatctctacttaaattttattaaatttttgatcccaacgctttttccgtt 43309615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 46044887 - 46044808
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc 143  Q
    |||||||||||| | |||| |||||||||||| | ||| ||||||  |||||| |||||||||||||||||||| |||||    
T  46044887 ttaattatgttttaggttcttataaataagcgtgttttcaacattagtccctacttaaattttattaaatttttgatccc 46044808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 38875152 - 38875079
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||| || |||||||||||||| ||||  ||||||  || ||| ||||||||||||||||||||    
T  38875152 ttaattatgtttaaggtccctataaataagcgtgcttccaacattagtctctacttaaattttattaaattttt 38875079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 33624486 - 33624566
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc 143  Q
    ||||||||||||| | || |||||||||| ||| | ||||||||||  | |||| |||||||||||||||||||| |||||    
T  33624486 attaattatgttttaggtccctataaataggcgcgtttttaacattagttcctacttaaattttattaaatttttgatccc 33624566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 38198764 - 38198837
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||  ||||||  |||||||||||||||||||||||||||    
T  38198764 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccctatttaaattttattaaattttt 38198837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 43832042 - 43831969
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||| ||  ||||||||| ||| | ||| ||||||  |||||| ||||||||||||||||||||    
T  43832042 ttaattatgtttaaggtctctataaataggcgcgttttcaacattagtccctacttaaattttattaaattttt 43831969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 46043369 - 46043442
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | ||||||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  46043369 ttaattatgttttaggttcctataaatatgcgcgtttccaacattagtccctacttaaattttattaaattttt 46043442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 43830654 - 43830733
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc 143  Q
    |||||||||||||| |  |||||||||| | | | ||| ||||||  |||||| |||||||||||||||||||| |||||    
T  43830654 ttaattatgtttaaggcccctataaataggtgcgttttcaacattagtccctacttaaattttattaaatttttgatccc 43830733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 44168327 - 44168285
Alignment:
Q  111 tccctatttaaattttattaaatttttcatcccaacatttttt 153  Q
    |||||| |||||||||||||||||||| |||||||| ||||||    
T  44168327 tccctacttaaattttattaaatttttgatcccaacgtttttt 44168285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 43083031 - 43083119
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacatttttt 153  Q
    |||||||||||| | || ||||||||||  || | ||||||||||  || ||| ||||||||||||||||||||  ||| ||||||||||    
T  43083031 ttaattatgttttaggt-cctataaatagacgtgtttttaacattagtctctacttaaattttattaaatttttggtcctaacatttttt 43083119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 44166845 - 44166918
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||| ||| | ||||  ||||||| ||| | || ||||||| ||||||| ||||||||||||||||||||    
T  44166845 ttaattatattttaggttctaataaataggcgcgtttctaacattaatccctacttaaattttattaaattttt 44166918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 45957808 - 45957881
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||| ||||||   ||||| ||||||||||||||||||||    
T  45957808 ttaattatgttttaggtccctataaataggcgtgttttcaacattagcccctacttaaattttattaaattttt 45957881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 3865368 - 3865530
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac--attttttccgtttg 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||   ||||||| |||||    
T  3865368 ttaattatgtttaaagttcctataaataagcgagctttcaacattggtcccaatttaaattttattaaatttttcatccccaacgttttttttctgtttg 3865467  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  3865468 taagtttggtccttgccgtcaaactgtgctgactaggctaacagaatgttgactcagacatgc 3865530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 3866979 - 3866817
Alignment:
Q  64 ttaattatgtttaaagttcctata--aataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttccgtttg 160  Q
    |||||||| |||||||| ||||||  |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3866979 ttaattatatttaaagtccctatataaataagtgagctttcaacattggtccctatttaaattttattaaatttttcatccccaacgttttttccgtttg 3866880  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||||  ||||||| ||| |||||||||||||||||||||||| ||||||||||||||    
T  3866879 taagtttggtccttgccgtcaaattgtgctgactaggctaacagaatgttgactcagacatgc 3866817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 30134144 - 30133981
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaaca---ttttttccgttt 159  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||   |||||| |||||    
T  30134144 ttaattatgtttaaggttcctacaaataagcgagctttcaacattgatctctattaaaattttattaaatttttcatccccaacattttttttttcgttt 30134045  T
Q  160 gtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||||  |||| || |||||||||||||||||||||| |||||| |||||||||||||    
T  30134044 gtaagtttggtccttgctgtcaaactgtgctgactaggctaacggaatgccgactcagacatgc 30133981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 32243356 - 32243518
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttg 160  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||  ||||||| |||||    
T  32243356 attaattatgtttaaggtctctataaataagcgagctttcaacattggtccctatttaaattttattaaatttttcatccccaacgtttttttcggtttg 32243455  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||| |  ||||||| |||||||| ||||||||| ||||||||| ||||||||||||||    
T  32243456 taagtttgatccttgccgtcaaactgtgttgactaggcgaacagaatgttgactcagacatgc 32243518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 44893535 - 44893696
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttttt-ccgtttgt 161  Q
    |||||||||||||| || |||| ||||||||||||||  ||||||| ||| |||| |||||||||||||||||||||||| ||| |||||| || |||||    
T  44893535 ttaattatgtttaaggtccctacaaataagcgagcttccaacattggtccatattaaaattttattaaatttttcatccctaacgtttttttccctttgt 44893634  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  44893635 aagtttggtccttgccgtcaaactgtgctgactaggctaactgaatgctgacccagacatgc 44893696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 44895024 - 44894865
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttttt-ccgtttgt 161  Q
    |||||||||||||| || |||| |||||| |||||||  ||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  44895024 ttaattatgtttaaggt-cctacaaataaccgagcttccaacattggtccctattaaaattttattaaatttttcatccctaacatttttttccgtttgt 44894926  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    |||||||||  ||||||| |||||||||||||||||||||| ||||| |||| ||||||||    
T  44894925 aagtttggtccttgccgtcaaactgtgctgactaggctaacggaatgatgacccagacatg 44894865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 32245012 - 32244852
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc-caac-attttttccgtttgt 161  Q
    ||||||||||||||||||| ||||||||| |||||||  || ||||||||||||||||||||||||||||||||||||| ||||  |||||| |||||      
T  32245012 ttaattatgtttaaagttcttataaataaacgagcttccaatattgatccctatttaaattttattaaatttttcatcctcaacgttttttttcgtttac 32244913  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    |||||||||  ||||||| ||| |||||||||||||| |||||   |||||||||||||||    
T  32244912 aagtttggtcattgccgtcaaattgtgctgactaggccaacagttagctgactcagacatg 32244852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 6243206 - 6243309
Alignment:
Q  111 tccctatttaaattttattaaatttttcatcc-caacattttt-tccgtttgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatg 208  Q
    |||||||||||||||||||||||||||||||| |||  ||||| ||||||||||| ||||||  ||||||| ||||||||||||||||| ||||||||||    
T  6243206 tccctatttaaattttattaaatttttcatcctcaatgtttttatccgtttgtaaatttggtcattgccgtcaaactgtgctgactaggttaacagaatg 6243305  T
Q  209 ctga 212  Q
    ||||    
T  6243306 ctga 6243309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 6244604 - 6244503
Alignment:
Q  125 ttattaaatttttcatcccaaca---ttttttccgtttgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacat 221  Q
    ||||||||||||||||||| | |   |||||||||||||||||  ||||  ||||||| |||||||| |||||||||||||| |||| |||| |||||||    
T  6244604 ttattaaatttttcatccccaaagttttttttccgtttgtaagagtggtccttgccgtcaaactgtgatgactaggctaacaaaatgttgacccagacat 6244505  T
Q  222 gc 223  Q
    ||    
T  6244504 gc 6244503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 45023413 - 45023340
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||| ||||||| |||||||  |||||| |||| ||| ||||||||||||||||||||||||||||| ||||||    
T  45023413 ttaaatatgtttgaagttcccgtaaatatgcgaccttctaacattgatccctatttaaattttattatattttt 45023340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 42816018 - 42816091
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||| || |||||||||| ||| ||||  ||||||  |||||| ||||||||||||||||||||    
T  42816018 ttaattatgtttaaggtccctataaatacgcgtgcttccaacattagtccctacttaaattttattaaattttt 42816091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 35368889 - 35368979
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatc-ccaacatttttt 153  Q
    |||||||||||| | ||||||||||||| ||| | ||| ||||||  | |||| |||||||||||||||||||| ||| ||||| ||||||    
T  35368889 ttaattatgttttaggttcctataaataggcgtgttttcaacattagtacctacttaaattttattaaattttttatctccaacgtttttt 35368979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 37705836 - 37705909
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||| ||||||  |||||| ||||||||||||||||||||    
T  37705836 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaattttt 37705909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 13324144 - 13324065
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc 143  Q
    |||||||||||| | || |||||||||| ||| | ||  ||||||  |||||| |||||||||||||||||||| |||||    
T  13324144 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttgatccc 13324065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 21136535 - 21136461
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    ||||||||||||| | || |||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  21136535 attaattatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaattttt 21136461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 21575559 - 21575605
Alignment:
Q  113 cctatttaaattttattaaatttttcat-cccaacattttttccgtt 158  Q
    |||| |||||||||||||||||||| || ||||||||||||||||||    
T  21575559 cctacttaaattttattaaatttttgatccccaacattttttccgtt 21575605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 14835021 - 14835094
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||| || | |||||| ||||| | ||| || ||| ||||||| |||||||||| |||||||||    
T  14835021 ttaattatgtttaaggtccttataaacaagcgtgttttcaatattaatccctacttaaattttaataaattttt 14835094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 24452693 - 24452620
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| |||| |||||||||| ||| | ||  ||||||  |||||| |||||||||||||| |||||    
T  24452693 ttaattatgttttaagtccctataaataggcgtgtttccaacattagtccctacttaaattttattaatttttt 24452620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 36062503 - 36062576
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || | |||||||| ||| | ||| ||||||  || ||||||||||||||||||||||||    
T  36062503 ttaattatgttttaggtccttataaataggcgcgttttcaacattagtctctatttaaattttattaaattttt 36062576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 39308278 - 39308351
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||| || ||||||||||  || | ||| ||| ||  |||||| ||||||||||||||||||||    
T  39308278 ttaattatgtttaaggtccctataaatagacgtgttttcaaccttagtccctacttaaattttattaaattttt 39308351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 24451180 - 24451272
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacattttttcc 155  Q
    |||||||| ||| | || |||||||||| ||| | ||  ||||||  |||||| |||||||||||||||||||| || |||||| ||||||||    
T  24451180 ttaattatattttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaatttttgatccccaacgttttttcc 24451272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 44557199 - 44557056
Alignment:
Q  82 cctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttc-cgtttgtaagtttggtatttgccgt 179  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||  |||||||    
T  44557199 cctataaataagcgagcttttaacattggtccctatttaaattttattaaatttttcatccccaacgttttttttcgtttgtaagtttggtccttgccgt 44557100  T
Q  180 taaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  44557099 caaactgtgctgactaggctaacagaatgctgactcagacatgc 44557056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 31992262 - 31992103
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacattttt-tccgtttgta 162  Q
    |||||||||||||  || |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31992262 ttaattatgtttatggtccctacaaataagcgagctttcaacattgattcctatttaaattttattaaatttttcatcccaacatttttatccgtttgta 31992163  T
Q  163 agtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    ||||||||  |||| || ||| ||||||||||||||||||||| ||||||| ||||||||    
T  31992162 agtttggtccttgctgtcaaattgtgctgactaggctaacagagtgctgacccagacatg 31992103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 41926951 - 41927112
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttca-tcccaaca-ttttttccgtttgt 161  Q
    |||||||||||||| || |||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||||||    
T  41926951 ttaattatgtttaaggtccctataaataagcgagcttccaacattggtccctatttaaattttattaaatttttcacccccaacatttttttccgtttgt 41927050  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||| |  |||||||||||||||||||||| |||||||||||||||||||    
T  41927051 aagtttggtccttgccatcgaactgtgctgactaggctaacaaaatgctgactcagacatgc 41927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 33476771 - 33476610
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttccg-tttgt 161  Q
    |||||||||||||| ||  ||||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||| ||| |||||| || |||||    
T  33476771 ttaattatgtttaaggtctctataaataagcgagctttcaatattggtccctatttaaattttattaaatttttcctccccaacgtttttttcggtttgt 33476672  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  33476671 aagtttagtctttgccgtcaaactgtgctgactaggctaacagaatgttgactcagacatgc 33476610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 8574983 - 8575145
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttttt--ccgtttg 160  Q
    |||||||||||||| || |||| ||||||| ||||||  ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||  || ||||    
T  8574983 ttaattatgtttaaggtccctacaaataagtgagcttccaacattgatccatatttaaattttattaaatttttcatccccaacgttttttttccatttg 8575082  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  8575083 taagtttggtcattgccgttaaactgtgctgactaggctaacaaaatgctgacttagacatgc 8575145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 44555597 - 44555758
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttt-ttccgtttgt 161  Q
    |||||||| |||||||| | |||||||||| | ||||  ||||||| || |||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  44555597 ttaattatatttaaagtccatataaataagtgggcttccaacattggtctctatttaaattttattaagtttttcatccccaacatttttttccgtttgt 44555696  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  44555697 aagtttggtccttgccgtcaaattgtgctggctaggctaacagaatgctgactcagacatgc 44555758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 41928451 - 41928292
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    |||||||||||||| |||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||  |||||| |||||||    
T  41928451 ttaattatgtttaaggttccta--aataagcgagcttttaacattggtccttatttaaattttattaaatttttcatccccaacgttttttttcgtttgt 41928354  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  |||| || ||| ||||||||||||||||||| |||  ||||||||||||||    
T  41928353 aagtttggtcattgctgtcaaattgtgctgactaggctaacataatattgactcagacatgc 41928292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 52700841 - 52701002
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttt-ttccgtttgt 161  Q
    |||||||||||||| || | || ||||||||||||||  ||||||||| |||| | |||||||||||||||||||||||| ||| |||| ||||||||||    
T  52700841 ttaattatgtttaaggtccttacaaataagcgagcttccaacattgattcctactaaaattttattaaatttttcatccccaacgtttttttccgtttgt 52700940  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  || |||| ||||||||||||||||||||||| |||||||||  ||||||||    
T  52700941 aagtttggtccttaccgtcaaactgtgctgactaggctaacaaaatgctgaccaagacatgc 52701002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 25233473 - 25233315
Alignment:
Q  68 ttatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatc-ccaac--attttttccgtttgtaag 164  Q
    |||||||||| || |||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||  | ||   |||||||||||||||||    
T  25233473 ttatgtttaaggtccctacaaataagcgagcttccaacattggtccctatttaaattttattaaatttttcatcttcgacgttttttttccgtttgtaag 25233374  T
Q  165 tttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||  ||||||| |||||||||||||| ||||||||||||  |||| |||||||||    
T  25233373 tttggtccttgccgtcaaactgtgctgacttggctaacagaatattgacccagacatgc 25233315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 33475151 - 33475311
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc-caac-attttttccgtttgt 161  Q
    ||||||||||||||||||| ||||||||| |||||||  |||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||      
T  33475151 ttaattatgtttaaagttcttataaataaacgagcttccaacattgatccctatttaaa-tttattaaatttttcatcctcaacgtttttttccgtttac 33475249  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||| ||||  ||||||| ||| |||| ||||||| |||||||   ||||||||||||||||    
T  33475250 aagtctggtccttgccgtcaaattgtgttgactagactaacagttagctgactcagacatgc 33475311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 31990751 - 31990913
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatc-ccaacattttttcc-gtttg 160  Q
    ||||||||||||| | || |||| |||||||| || |||||| |||| || |||||||||||||| ||||||||| ||| ||||| ||||||   |||||    
T  31990751 attaattatgtttcaggtccctacaaataagcaagtttttaatattggtctctatttaaattttaataaattttttatcaccaacgtttttttttgtttg 31990850  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||||  ||||||| |||||||| ||||||||||| ||||||||||||||| ||||||    
T  31990851 taagtttggttcttgccgtcaaactgtggtgactaggctagcagaatgctgactcaaacatgc 31990913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 8576521 - 8576357
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacattttttc---cgttt 159  Q
    |||||||||||||| || | || |||||||| |||||  ||||||  |||||||||||||||||||||||||||| | |||||| |||||||    ||||    
T  8576521 ttaattatgtttaaggtccgtacaaataagcaagcttccaacattagtccctatttaaattttattaaatttttcttccccaacgttttttcttttgttt 8576422  T
Q  160 gtaagtttggtatttgccgttaaactgtgctgact-aggctaacagaatgctgactcagacatgc 223  Q
    |||||||||||  ||||||| ||||| |||||||| | |||||||||| ||||||||||||||||    
T  8576421 gtaagtttggtccttgccgtcaaactatgctgactaaagctaacagaaagctgactcagacatgc 8576357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 52702278 - 52702114
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccca-acattttttc---cgtt 158  Q
    ||||||||||||||| || |||| ||||| | ||||||  ||||||| |||||||| ||||| ||||||||||||||||||  || ||||||    | ||    
T  52702278 attaattatgtttaaggtccctacaaataggtgagcttccaacattggtccctattaaaattatattaaatttttcatccccgacgttttttttttcatt 52702179  T
Q  159 tgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||| |||  ||||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  52702178 tgtaagttcggtccttgccgtcaaactgtgctgactaggctaacagaatgctgaccaagacatgc 52702114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 25353552 - 25353411
Alignment:
Q  68 ttatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacattttttccgtttgtaagttt 167  Q
    |||||||||| || | |||||||||||||||||  |||||||||||||||||||||||| |||  |||||              |||| |||||||||||    
T  25353552 ttatgtttaaggtccttataaataagcgagcttccaacattgatccctatttaaatttttttactttttt--------------ttccatttgtaagttt 25353467  T
Q  168 ggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25353466 ggtccttgccgtcaaactgtgctgactaggctaacagaatgctgactcagacatgc 25353411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 54185918 - 54185828
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacatttttt 153  Q
    |||||||||||| | |||| |||||||| ||| | ||| |||||| |||| || |||||||||||||||||||| || |||||||||||||    
T  54185918 ttaattatgttttatgttcttataaataggcgtgttttcaacattaatccatacttaaattttattaaatttttgatccccaacatttttt 54185828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 19831207 - 19831134
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||| || |||||||||||| | | ||  ||||||  |||||| ||||||||||||||||||||    
T  19831207 ttaattatgtttaaggtccctataaataagtgtgtttccaacattagtccctacttaaattttattaaattttt 19831134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 116626 - 116698
Alignment:
Q  65 taattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    ||||||||||| | || |||||||||||||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  116626 taattatgttttaggtccctataaataagcgtgtttccaacattagtccctacttaaattttattaaattttt 116698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 32942690 - 32942785
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacattttttccgtt 158  Q
    |||||||||||| | || |||||||| | ||  | || |||||||  |||||| |||||||||||||||||||| || |||||| |||||||||||    
T  32942690 ttaattatgttttaggtccctataaagaggcatgtttctaacattagtccctacttaaattttattaaatttttgatccccaacgttttttccgtt 32942785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 53246731 - 53246660
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatt 134  Q
    ||||||||||||||| || | |||||||||| | | ||| |||||| ||||||| |||||||||| ||||||    
T  53246731 attaattatgtttaaggtccatataaataagtgtgttttcaacattaatccctacttaaattttaataaatt 53246660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 50614247 - 50614337
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacatttttt 153  Q
    |||| ||||||| ||||  ||||||||| ||| | ||| ||||||  |||||| ||||||||||||||||||||  | |||||||||||||    
T  50614247 ttaaatatgttttaagtctctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttttggtccccaacatttttt 50614337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 27867778 - 27867851
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||||| ||| ||||||  | | || ||||||||||||||||||||    
T  27867778 ttaattatgttttaggtccctataaataggcgagttttcaacattagttcatacttaaattttattaaattttt 27867851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 32944200 - 32944127
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||  | ||||||||||  || ||| ||||||||||||||||||||    
T  32944200 ttaattatgttttaggtccctataaataggcacgtttttaacattagtctctacttaaattttattaaattttt 32944127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 32317892 - 32318050
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacattttttccgtttgtaa 163  Q
    ||||||| ||||||||| |||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||| |||  ||||||||||| ||||    
T  32317892 ttaattaggtttaaagtccctataaataagcgagcttccaacattggttcctatttaaattttattaaatttttcatcgcaatgttttttccgttggtaa 32317991  T
Q  164 gtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32317992 gtttggt-cctgccgtcaaactgtgctgactaggctaacagaatgctgactcagacatgc 32318050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 3117650 - 3117811
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttt-ttccgtttgt 161  Q
    |||||||||||||| || ||   |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  3117650 ttaattatgtttaaggtcccggcaaataagcaagctttcaacattgatccctatttaaattttattaaatttttcatccccaacgttttgttccgtttgt 3117749  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3117750 aagtttggtccttgccgtcaaactgtgctgattaggctaacagaatgctgactcagacatgc 3117811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 9112290 - 9112129
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttccg-tttgt 161  Q
    |||||||||||||| ||  ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||| |||||| || |||||    
T  9112290 ttaattatgtttaaggtctctataaataagcgagctttcaacattggttcctatttaaattttattaaatttttcatccccaacgtttttttcggtttgt 9112191  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  9112190 aagtttggtccttgccgtcaaactgtgttgactaggctaacagaatgctgactcagacatgc 9112129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 3119121 - 3118961
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaaca-ttttttccgtttgt 161  Q
    |||||||||||||| |||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||| ||||||  ||||||    
T  3119121 ttaattatgtttaaggttcttataaataagcgagcttttaacatttgaccctatttaaattttattaaatttttcatccccaacatttttttttgtttgt 3119022  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    |||||||||  ||||||| |||||||| |||||||| |||||||||||||||| |||||||    
T  3119021 aagtttggtccttgccgtcaaactgtgttgactaggttaacagaatgctgacttagacatg 3118961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 32320118 - 32319975
Alignment:
Q  81 tcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaac-attttttccgtttgtaagtttggtatttgccgt 179  Q
    |||| ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||    
T  32320118 tcctgtaaataaacgagcattcaacattgatccctatttaaattttattaaatttttcatcccaacgtttttttccgtttgtaagtttggttcttgccgt 32320019  T
Q  180 taaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
     |||||||| ||||||| |||||| |||||||||||||||||||    
T  32320018 caaactgtgttgactagactaacaaaatgctgactcagacatgc 32319975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 32319560 - 32319397
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac---attttttccgttt 159  Q
    ||||||||| |||| || | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||    ||||||| ||||    
T  32319560 ttaattatgcttaaggtccttataaataagcgagcatttaacattggtccctatttaaattttattaaatttttcatccccaacgtttttttttcagttt 32319461  T
Q  160 gtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||||  |||||||||||||||  |||||||||||||| ||||||||||||| |||||    
T  32319460 gtaagtttggtccttgccgttaaactgtagtgactaggctaacaaaatgctgactcaggcatgc 32319397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 9111249 - 9111410
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc-caac---attttttccgttt 159  Q
    ||||||||||||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| ||||    |||||| |||||    
T  9111249 ttaattatgtttaaagttcttataaataaacgagcttccaacattgatccctatttaaattttattaaatttttcatcctcaacgttttttttttcgttt 9111348  T
Q  160 gtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
      |||||  ||  ||||||| ||| ||||||||||| |||||||||||||||||||||||||||    
T  9111349 acaagtt--gtccttgccgtcaaattgtgctgactaagctaacagaatgctgactcagacatgc 9111410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 30982319 - 30982462
Alignment:
Q  82 cctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacatttt-ttccgtttgtaagtttggtatttgccgt 179  Q
    |||| ||||||||||||||  ||||||| |||||| | ||||| ||||||||||||||| |||||| |||| ||||||||||||||| |||| |||||||    
T  30982319 cctacaaataagcgagcttccaacattggtccctaataaaattatattaaatttttcattcccaacgtttttttccgtttgtaagttcggtacttgccgt 30982418  T
Q  180 taaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||||    
T  30982419 taaactgtgctgactaggctaacggaatgttgaccaagacatgc 30982462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 30983005 - 30982844
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc-caa-cattttttccgtttgt 161  Q
    |||||||||||||| || | || ||||||||||||||  ||||||| |||||| | ||||||||||||||||||||||| |||   ||||||||||||||    
T  30983005 ttaattatgtttaaggt-catacaaataagcgagcttccaacattggtccctactaaaattttattaaatttttcatcctcaatgtttttttccgtttgt 30982907  T
Q  162 aag-tttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||| ||||||  || |||| ||||||||||||||||| |||||||||||||||  ||||||||    
T  30982906 aagttttggtccttcccgtcaaactgtgctgactaggttaacagaatgctgaccaagacatgc 30982844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 18673366 - 18673332
Alignment:
Q  103 aacattgatccctatttaaattttattaaattttt 137  Q
    |||||| ||||||||||||||||||||||||||||    
T  18673366 aacattaatccctatttaaattttattaaattttt 18673332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 3104693 - 3104774
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaa 145  Q
    |||||||||||| | || |||||||||||||| | ||  ||||||  | | || |||||||||||||||||||| |||||||    
T  3104693 ttaattatgttttaggtccctataaataagcgtgtttccaacattagttcatacttaaattttattaaattttttatcccaa 3104774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 20721814 - 20721741
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||| ||||||  ||| || ||||||||||||||||||||    
T  20721814 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccatacttaaattttattaaattttt 20721741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 23788082 - 23788046
Alignment:
Q  119 taaattttattaaatttttcatcccaacattttttcc 155  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  23788082 taaattttattaaatttttgatcccaacgttttttcc 23788046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 289969 - 289813
Alignment:
Q  68 ttatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatc-ccaacattttttc-cgtttgtaagt 165  Q
    |||||||||| |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||  |||||||||||    
T  289969 ttatgtttaaggttc-tataaataagcgagcatttaacattggtccctatttaaattttattaaattttttatctccaacgttttttttcgtttgtaagt 289871  T
Q  166 ttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  289870 ttggtccttgccgtcaaactgtgctgactaggctaacagaatgctgactcagacatgc 289813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 3912940 - 3913100
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacattttt-tccgtttgta 162  Q
    ||||||||||||||  | |||| |||||||||   |||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  3912940 ttaattatgtttaagctccctacaaataagcggatttttaatattggtccctatttaaattttattaaatttttcatcccaacgtttttatccgtttgta 3913039  T
Q  163 agtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||  |||| || |||||||||| |||||||||||||||||||||| |||||||||    
T  3913040 agtttggtccttgcggtcaaactgtgctaactaggctaacagaatgctgacccagacatgc 3913100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 288679 - 288840
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacattttttcc--gtttgt 161  Q
    ||||||| |||||||||| |||| ||||||||| |||  | ||||  ||| |||| ||||||||||||||||||||||||||| |||||||   ||| ||    
T  288679 ttaattaagtttaaagtttctatcaataagcgaacttccagcattagtccttattaaaattttattaaatttttcatcccaacgttttttctctgttggt 288778  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  288779 aagtttggtccttgccgtcaaactgtgctgactaggctaacagaatgctgactcagacatgc 288840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 21108680 - 21108520
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaaca-ttttttccgtttgt 161  Q
    |||||||||||||| ||||||| ||||||||||||||  ||||||| |||||| | ||||||||||||||||||||| ||||||| ||||||||||||||    
T  21108680 ttaattatgtttaaggttcctacaaataagcgagcttccaacattggtccctactaaaattttattaaatttttcatccccaacatttttttccgtttgt 21108581  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    ||||||||| ||| |||| ||  |||||||||||||||||| ||||| ||||  |||||||    
T  21108580 aagtttggtctttaccgtcaagttgtgctgactaggctaacggaatgttgaccaagacatg 21108520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 5087036 - 5086876
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttttt--ccgtttg 160  Q
    |||||||||||||| || |||||||||||||||||||  ||||||  ||| | ||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  5087036 ttaattatgtttaaggtccctataaataagcgagcttccaacattcgtcctt-tttaaattttattaaatttttcatccccaacgttttttttccgtttg 5086938  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    |||||||| |  ||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  5086937 taagtttgatccttgccgtcaaattgtgctgactaggctaacagaatgctgactcaggcatg 5086876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 3915071 - 3914963
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    |||||||||||||| || |||| |||||| | |||||  | ||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||| |    
T  3915071 ttaattatgtttaaggtccctacaaataaacaagcttccatcattagtccctattttaattttattaaatttttcatccccaacgattttttccgtttat 3914972  T
Q  162 aagtttggt 170  Q
    |||||||||    
T  3914971 aagtttggt 3914963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 7852250 - 7852339
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacatttttt 153  Q
    |||||||||||| | || |||||||||| ||| | ||| |||||| ||||||| ||||||||||||||||||||  |||||| |||||||    
T  7852250 ttaattatgttttaggtccctataaataggcgtgttttcaacattaatccctacttaaattttattaaatttttggtcccaatatttttt 7852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 7855482 - 7855409
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| |||| |||||||||| ||| | ||| ||||||  |||||| ||||||||||||||||||||    
T  7855482 ttaattatgttttaagtccctataaataggcgtgttttcaacattagtccctacttaaattttattaaattttt 7855409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 3914916 - 3914874
Alignment:
Q  181 aaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  3914916 aaactgtgctgactaggctaacggaatgctgacccagacatgc 3914874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 2546582 - 2546512
Alignment:
Q  102 taacattgatccctatttaaattttattaaatttttcatcc-caacattttttc-cgtttgtaagtttggt 170  Q
    ||||||| ||| ||||||||||||||||  ||||||||||| |||| ||||||| |||||||| |||||||    
T  2546582 taacattaatctctatttaaattttattctatttttcatcctcaacgttttttcacgtttgtaggtttggt 2546512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 15119434 - 15119361
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||| || |||||||||| | | | ||  ||||||  |||||| ||||||||||||||||||||    
T  15119434 ttaattatgtttaaggtccctataaataggtgtgtttccaacattagtccctacttaaattttattaaattttt 15119361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 19333573 - 19333412
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatc-ccaacatttttt-ccgtttgt 161  Q
    |||||||||||||| || |||| |||||||||||||   |||||||||||||||| ||||| |||||||||||||||| ||||| |||||| ||||||||    
T  19333573 ttaattatgtttaaggtccctacaaataagcgagctaccaacattgatccctattaaaattatattaaatttttcatcaccaacgtttttttccgtttgt 19333474  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||| |||  ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19333473 aagttcggtccttgccgtcaaactgtgctgactaggctaacagaatgctgactaagacatgc 19333412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 40272137 - 40272298
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc-caac-attttttccgtttgt 161  Q
    ||||||||||||||||||| |||||||||  ||||||  |||||||||||||||||||||||||||||||||||||||| ||||  |||||| |||||      
T  40272137 ttaattatgtttaaagttcttataaataaatgagcttccaacattgatccctatttaaattttattaaatttttcatcctcaacgttttttttcgtttac 40272236  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||| |  ||||||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  40272237 aagtttgatccttgccgtcaaattgtgctgactaggctaacaaaatgctgactcagacatgc 40272298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 3407503 - 3407343
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaac-attttttccgtttgta 162  Q
    |||||||||||||| || |||| ||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||  |||||||||||||||    
T  3407503 ttaattatgtttaaggtccctacaaataagcgagctttcaacattggtccctactaaaattttattaaatttttcatcccaacgtttttttccgtttgta 3407404  T
Q  163 agtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||||  || |||| |||||||| ||||||||||||  ||||||||||  ||||||||    
T  3407403 agtttggtccttaccgtcaaactgtgttgactaggctaaaggaatgctgaccaagacatgc 3407343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 43211243 - 43211083
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacatttttt-ccgtttgt 161  Q
    ||||||||||||||  |||||| |||||||| ||||| ||| |||| || ||| |||||||||||||||| ||| ||||| ||| |||||| ||||||||    
T  43211243 ttaattatgtttaagcttcctacaaataagcaagcttctaatattggtctctacttaaattttattaaatattttatccccaacgtttttttccgtttgt 43211144  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatg 222  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  43211143 aagtttggtctttgccgtcaaactgtgctgactaggctaacagaatgttgacccagacatg 43211083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 2263406 - 2263245
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccca-acattttt-tccgtttgt 161  Q
    |||||||||||||| || |||  |||||||| | |||  ||||||| ||||||||||||||||||||||||| |||||||  || ||||| |||||| ||    
T  2263406 ttaattatgtttaaggtcccttcaaataagcaaacttccaacattggtccctatttaaattttattaaatttctcatccccgacgtttttatccgttagt 2263307  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  2263306 aagtttggtccttgccgtcaaactgtgctgactaggctaacataatgctgactcagacatgc 2263245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 212
Target Start/End: Original strand, 37811964 - 37812113
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    |||||||||||||| || |||| ||||||||||||||  ||||||| |||||| | ||||||||||||||||||||| ||||||  ||||||||||||||    
T  37811964 ttaattatgtttaaggtccctacaaataagcgagcttccaacattggtccctactaaaattttattaaatttttcatccccaacgtttttttccgtttgt 37812063  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctga 212  Q
    |||||||||  || ||| | |||||||||||||||||||||||||||||||    
T  37812064 aagtttggtccttaccg-tcaactgtgctgactaggctaacagaatgctga 37812113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 42258503 - 42258339
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac----attttttccgtt 158  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||  || || | ||||||||||||||||||||| ||||||     |||||||||||    
T  42258503 ttaattatgtttaaggttcctataaataagcgagcttccaacattggaccttactaaaattttattaaatttttcatccccaacgttttttttttccgtt 42258404  T
Q  159 tgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  |  || |||| ||||||| |||||||||||||| ||||||||||  ||||||||    
T  42258403 tgtaagtttaatccttaccgtcaaactgtactgactaggctaacggaatgctgaccaagacatgc 42258339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 9168468 - 9168584
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaa---cattttttccgtttg 160  Q
    ||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||||||||   |||||||||||||||| |     |||||||| ||||    
T  9168468 ttaattatgtttaaagtccctataaataagcgagcttccaacattggtccctatttaaatt---ttaaatttttcatccccaatgttttttttccatttg 9168564  T
Q  161 taagtttggtatttgccgtt 180  Q
    |||||||||| |||||||||    
T  9168565 taagtttggtctttgccgtt 9168584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 37813338 - 37813197
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aac--attttttccgtttg 160  Q
    ||||||||||||||  | | || ||||||||||||||  ||||||| | |||||| |||||||||||||||||||||||| |||   |||||||||||||    
T  37813338 ttaattatgtttaagatccttacaaataagcgagcttccaacattgtttcctattaaaattttattaaatttttcatccctaacgttttttttccgtttg 37813239  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaac 202  Q
     |||||  ||  ||||||| ||||||||||||||||||||||    
T  37813238 gaagttcagtccttgccgtcaaactgtgctgactaggctaac 37813197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 41617342 - 41617440
Alignment:
Q  122 attttattaaatttttcatccc-aacatttt-ttccgtttgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcaga 218  Q
    |||||||||||||||||||||| ||| |||| |||||||||||||||||||  ||||||| ||| | |||||| ||| |||||||||||||||||||||    
T  41617342 attttattaaatttttcatccccaacgtttttttccgtttgtaagtttggtccttgccgtcaaattatgctgattagactaacagaatgctgactcaga 41617440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 43209692 - 43209814
Alignment:
Q  102 taacattgatccctatttaaattttattaaatttttcatccc-aac-attttttccgtttgtaagtttggtatttgccgttaaactgtgctgactaggct 199  Q
    |||||||| | |||| |||||||||||||||| ||||||| | ||| |||||||| ||||||||||||| |  ||||||| |||||||| ||||||||||    
T  43209692 taacattggttcctaattaaattttattaaatatttcatctctaacgattttttctgtttgtaagtttgatccttgccgtcaaactgtgttgactaggct 43209791  T
Q  200 aacagaatgctgactcagacatg 222  Q
    |||| |||| | || ||||||||    
T  43209792 aacataatgttaacccagacatg 43209814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 42645446 - 42645345
Alignment:
Q  124 tttattaaatttttcatccc-aacattttt-tccgtttgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacat 221  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||  ||||||| ||| |||| |||||||||||||| ||||||||| || ||||    
T  42645446 tttattaaatttttcatccccaatgtttttatccgtttgtaagtttggtccttgccgtcaaattgtgatgactaggctaacataatgctgacccatacat 42645347  T
Q  222 gc 223  Q
    ||    
T  42645346 gc 42645345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 19332228 - 19332303
Alignment:
Q  148 ttttttccgtttgtaagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||| |||||||||||||||  || |||| ||||| |||||||||||||||| ||||||||||  ||||||||    
T  19332228 ttttttctgtttgtaagtttggttcttaccgtcaaactctgctgactaggctaacggaatgctgaccaagacatgc 19332303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 19193129 - 19193061
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaa 132  Q
    |||||||||||||| | ||||| ||||||||||||||  |||||| ||||||||| ||||| |||||||    
T  19193129 ttaattatgtttaaggatcctacaaataagcgagcttccaacattaatccctattaaaattatattaaa 19193061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 18951237 - 18951147
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacatttttt 153  Q
    |||||||||||| | || | |||||||||||| | ||  ||||||  |||||| |||||||||||||||||||| || |||||||||||||    
T  18951237 ttaattatgttttaggtccttataaataagcgtgtttccaacattagtccctacttaaattttattaaatttttgatccccaacatttttt 18951147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 26864932 - 26865006
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    ||||||||||||| | || |||||||||||||| | || |||||||  |||||| |||||||||||| |||||||    
T  26864932 attaattatgttttaggtccctataaataagcgcgtttctaacattagtccctacttaaattttattcaattttt 26865006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 13921246 - 13921173
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || | |||||||| ||| | ||  ||||||  |||||||||||||||||||||||||||    
T  13921246 ttaattatgttttaggtccttataaataggcgcgtttccaacattagtccctatttaaattttattaaattttt 13921173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 23312659 - 23312732
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||  |||||| || |||| ||||||||||||||||||||    
T  23312659 ttaattatgttttaggtccctataaataggcgtgtttccaacattaattcctacttaaattttattaaattttt 23312732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 23318129 - 23318056
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  23318129 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaattttt 23318056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 26866271 - 26866198
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  26866271 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaattttt 26866198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 41140214 - 41140141
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  41140214 ttaattatgttttaggtccctataaataggcgcgtttccaacattagtccctacttaaattttattaaattttt 41140141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 41617295 - 41617331
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagctt 100  Q
    |||||||||||||||||  ||||||||||||||||||    
T  41617295 ttaattatgtttaaagtcactataaataagcgagctt 41617331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 282614 - 282775
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    ||||||||||||||||| |||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  282614 ttaattatgtttaaagtccctataaataagcgagtttccaacattggtccctatttaaattttattaaatttttcatccccaacgtttttttccgtttgt 282713  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  || |||| ||| |||| ||||||||||||||||||  ||||||||| ||||    
T  282714 aagtttggtccttaccgtcaaattgtgttgactaggctaacagaattttgactcagaaatgc 282775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 283851 - 283691
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||  ||||||||||||||    
T  283851 ttaattatgtttaaagtccttataaataagcgagcttttaatattggtccctattttaattttattaaatttttcatccccaacgtttttttccgtttgt 283752  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  |||| || |||||||| ||||| |||||||| ||||||||||| |||||||    
T  283751 aagtttggtccttgctgtcaaactgtgttgact-ggctaacaaaatgctgactctgacatgc 283691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 34513647 - 34513486
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    |||||||||||||| || |||| ||||||||||||||  ||||||| |||||||| ||||||||||||||||||||| ||||||  ||||||||||||||    
T  34513647 ttaattatgtttaaggtccctacaaataagcgagcttccaacattggtccctattaaaattttattaaatttttcatccccaacgtttttttccgtttgt 34513548  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  ||||||| |||||||||||||||||||||| ||||| |||  |||||||||    
T  34513547 aagtttggtccttgccgtcaaactgtgctgactaggctaacggaatgttgatccagacatgc 34513486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 28162914 - 28163070
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    |||||||||||||| ||  ||| ||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||||||    
T  28162914 ttaattatgtttaaggtctctacaaataagcgagcttccaacattgatccctattaaaattttattaaatttttcatccccaacgtttttttccgtttgt 28163013  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcaga 218  Q
    |||||||||  ||||||| ||| |||||||||||||||||||||||| |||| ||||    
T  28163014 aagtttggtccttgccgtcaaattgtgctgactaggctaacagaatgttgacccaga 28163070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 44451765 - 44451927
Alignment:
Q  64 ttaattatgtttaaagttcc-tataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc-aacattttttcc-gtttg 160  Q
    |||||||||||||| || || |||||| || |||| ||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||| | |||||    
T  44451765 ttaattatgtttaaggtcccctataaagaaacgagttttcaacattggttcctatttaaattttattaaatttttcatccccaacatttttttctgtttg 44451864  T
Q  161 taagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||| |  ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  44451865 taagtttgatccttgccgtcaaactgtgctgactaggctaacagaatgctaactcagacatgc 44451927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 28164337 - 28164176
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc--aacattttttccgtttgt 161  Q
    |||||||||||||| ||  ||| |||||| ||||||||||| |||| |||||||| |||||||||||||||||| |||||  |   ||||||||||||||    
T  28164337 ttaattatgtttaacgtctctacaaataaacgagcttttaatattggtccctattaaaattttattaaattttttatccccaatgtttttttccgtttgt 28164238  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    ||||||| | ||| | || ||||||||||||||||||||||||||||||||| | |||||||    
T  28164237 aagtttgatctttactgtcaaactgtgctgactaggctaacagaatgctgaccctgacatgc 28164176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 34512234 - 34512392
Alignment:
Q  68 ttatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaa-----cattttttccgtttgta 162  Q
    |||||||||| || |||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |       |||||| ||||||||    
T  34512234 ttatgtttaaggtccctacaaataagcgagctttcaacattgttccctattaaaattttattaaatttttcatccccaatgtttttttttttcgtttgta 34512333  T
Q  163 agtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacat 221  Q
    ||||||||  ||||||| |||||||||||||||||||||| ||||||| || |||||||    
T  34512334 agtttggtccttgccgtcaaactgtgctgactaggctaacggaatgctaacccagacat 34512392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 13508548 - 13508692
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacatttt-ttccgtttgt 161  Q
    |||||||||||||| || |||| ||||||||||||||| ||||||| |||||| | |||||| |||||||||||||| |||||| |||| ||||||||||    
T  13508548 ttaattatgtttaaggt-cctacaaataagcgagctttcaacattggtccctactaaaatttaattaaatttttcatccccaacgttttcttccgtttgt 13508646  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaat 207  Q
    |||||||||  || |||| |||||||||||||||||||||| ||||    
T  13508647 aagtttggtccttaccgtcaaactgtgctgactaggctaacggaat 13508692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 48738188 - 48738349
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaac-attttttccgtttgt 161  Q
    ||||| |||||||| || |||| ||||||||||||||| ||||||||||| || | ||||||||||||||||||| | ||||||  |||||||||||||     
T  48738188 ttaatcatgtttaaggtccctacaaataagcgagctttcaacattgatccgtactaaaattttattaaatttttcttccccaacgtttttttccgtttga 48738287  T
Q  162 aagtttggtatttgccgttaaactgtgctgactaggctaacagaatgctgactcagacatgc 223  Q
    |||||||||  || ||||  || |||||||||||||||||| || |||||||  ||||||||    
T  48738288 aagtttggtccttaccgtccaattgtgctgactaggctaacggattgctgaccaagacatgc 48738349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 35061408 - 35061327
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaa 145  Q
    |||||||||||| | || |||||||||| ||| | ||| ||||||  |||||| |||||||||||||||||||| |||||||    
T  35061408 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccctacttaaattttattaaatttttgatcccaa 35061327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 45045203 - 45045276
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||||||||||||||||| |||   ||  ||||||  |||||||||||||||||||| ||||||    
T  45045203 ttaattatgtttaaagttcctataaatatgcgcatttccaacattagtccctatttaaattttattatattttt 45045276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 53568855 - 53568947
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcat-cccaacattttttcc 155  Q
    |||||||||||| | ||||||||||||| ||| | ||| |||||| |||  || ||||||||||||||||||||  | |||||||||||||||    
T  53568855 ttaattatgttttaggttcctataaataggcgtgttttcaacattaatctttacttaaattttattaaatttttggtccccaacattttttcc 53568947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 25244197 - 25244118
Alignment:
Q  63 attaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcc 142  Q
    |||||||||||||  ||| |||||||||| ||| | ||  |||||| || ||||||||||||||||||||||||| ||||    
T  25244197 attaattatgttttgagtccctataaataggcgcgtttccaacattaattcctatttaaattttattaaattttttatcc 25244118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 10322911 - 10322838
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||||| ||  ||||||  |||||| ||||||||||||||||||||    
T  10322911 ttaattatgttttaggtccctataaataggcgagtttccaacattagtccctacttaaattttattaaattttt 10322838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 13086522 - 13086449
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||||| ||||||||||||| |||   ||| ||||||  |||| | ||||||||||||||||||||    
T  13086522 ttaattatgtttaaggttcctataaataggcgcattttcaacattagtcccaacttaaattttattaaattttt 13086449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 31318148 - 31318075
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | || |||||||  |||||| ||||||||||||||||||||    
T  31318148 ttaattatgttttaggtccctataaataggcgcgtttctaacattagtccctacttaaattttattaaattttt 31318075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 25423276 - 25423188
Alignment:
Q  65 taattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatcccaacatttttt 153  Q
    ||||||||||| | | ||||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||  ||||||| ||||||    
T  25423276 taattatgttttaggatcctataaataggcgcgtttccaacattagtccctacttaaattttattaaatttttggtcccaacgtttttt 25423188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 53572119 - 53572040
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc 143  Q
    |||||||| ||| | ||||||||||||| | | | ||||||||||  || ||| |||||||||||||||||||| |||||    
T  53572119 ttaattatattttaggttcctataaataggtgtgtttttaacattagtctctacttaaattttattaaatttttgatccc 53572040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 101027 - 100959
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaa 132  Q
    |||||||||||||| || |||| |||||||| || || |||||||| ||||||||||||||||||||||    
T  101027 ttaattatgtttaaggtccctacaaataagcaagtttctaacattggtccctatttaaattttattaaa 100959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 100862 - 100941
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaatttttcatccc 143  Q
    ||||||||||||||  | |||| ||||||| ||||||  || |||| ||||||| |||||||||||||||||||||||||    
T  100862 ttaattatgtttaagatccctacaaataagagagcttccaatattggtccctatataaattttattaaatttttcatccc 100941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 5522 - 5595
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | || |||||||  |||||| ||||||||||||||||||||    
T  5522 ttaattatgttttaggtccctataaataggcgcgtttctaacattagtccctacttaaattttattaaattttt 5595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 25643 - 25570
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||| ||||||  ||| || ||||||||||||||||||||    
T  25643 ttaattatgttttaggtccctataaataggcgcgttttcaacattagtccatacttaaattttattaaattttt 25570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 49349 - 49276
Alignment:
Q  64 ttaattatgtttaaagttcctataaataagcgagcttttaacattgatccctatttaaattttattaaattttt 137  Q
    |||||||||||| | || |||||||||| ||| | ||  ||||||  |||||| ||||||||||||||||||||    
T  49349 ttaattatgttttaggtccctataaataggcgtgtttccaacattagtccctacttaaattttattaaattttt 49276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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