View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_61 (Length: 241)
Name: NF10707_low_61
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 11380751 - 11380968
Alignment:
| Q |
6 |
gctgcggcgacagcaacaactgcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaacagccactgggg |
105 |
Q |
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| T |
11380751 |
gctgcggcgacagcaacaacagcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaacaaccactgggg |
11380850 |
T |
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| Q |
106 |
attgggcaggaggtgaatcagaaaagatggtaggagcctctgaggtttttggcgattctgcttctgcaactggtgctgatgcctttggtgatgaagttgg |
205 |
Q |
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| T |
11380851 |
attgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggcgattctgcttctgcaactggtgctgatgcctttggtgatgaagctgg |
11380950 |
T |
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| Q |
206 |
ggcttcagcggccatagc |
223 |
Q |
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| T |
11380951 |
ggcttcagcggccatagc |
11380968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 11396129 - 11396346
Alignment:
| Q |
6 |
gctgcggcgacagcaacaactgcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaacagccactgggg |
105 |
Q |
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| T |
11396129 |
gctgcggcgacagcaacaacagcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaacaaccactgggg |
11396228 |
T |
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| Q |
106 |
attgggcaggaggtgaatcagaaaagatggtaggagcctctgaggtttttggcgattctgcttctgcaactggtgctgatgcctttggtgatgaagttgg |
205 |
Q |
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| T |
11396229 |
attgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggggattctgcttctgcaactggtgctgatgcctttggtgatgaagttgg |
11396328 |
T |
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| Q |
206 |
ggcttcagcggccatagc |
223 |
Q |
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| T |
11396329 |
ggcttcagcggccatagc |
11396346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 11404151 - 11404368
Alignment:
| Q |
6 |
gctgcggcgacagcaacaactgcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaacagccactgggg |
105 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11404151 |
gctgcggcgacagcaacaatagcggagactttcaaagaagaagcaccactagctgcaccagggccggaaacaggagggacaacgtcaacaaccactgggg |
11404250 |
T |
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| Q |
106 |
attgggcaggaggtgaatcagaaaagatggtaggagcctctgaggtttttggcgattctgcttctgcaactggtgctgatgcctttggtgatgaagttgg |
205 |
Q |
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| T |
11404251 |
attgggcaggaggtgaatcagaaaaggtggtaggagcctctgaggtttttggggattctgcttctgcaactggtgctgatgcctttggtgatgaagttgg |
11404350 |
T |
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| Q |
206 |
ggcttcagcggccatagc |
223 |
Q |
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| T |
11404351 |
ggcttcagcggccatagc |
11404368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 11452953 - 11453056
Alignment:
| Q |
94 |
cagccactggggattgggcaggaggtgaatcagaaaagatggtaggagcctctgaggtttttggcgattctgcttctgcaactggtgctgatgcctttgg |
193 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || |||||| |||||| || |||| ||| | ||| ||||||| ||||||||||||| |
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| T |
11452953 |
cagccactggggattgggcaggaggtgaatcaacaaagaggggaggagcatctgagattgttgggacatctaatcctgtaactggtcctgatgcctttgg |
11453052 |
T |
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| Q |
194 |
tgat |
197 |
Q |
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|||| |
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| T |
11453053 |
tgat |
11453056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 11452830 - 11452882
Alignment:
| Q |
7 |
ctgcggcgacagcaacaactgcggagactttcaaagaagaagcaccactagct |
59 |
Q |
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| T |
11452830 |
ctgcggcgacagcaacaacagcggatactttcagagaagaagcatcactagct |
11452882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 11453161 - 11453202
Alignment:
| Q |
182 |
tgatgcctttggtgatgaagttggggcttcagcggccatagc |
223 |
Q |
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| T |
11453161 |
tgatgactttggtgatgaagctggggcttcagcggccatagc |
11453202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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