View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10707_low_64 (Length: 240)
Name: NF10707_low_64
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_64 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33063382 - 33063160
Alignment:
| Q |
1 |
cccaatattgagcacgtttaaaatcattcatttcagcaagttgattattaggaatagcaaccataacttcaattccactaccagccaaagcagtcattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33063382 |
cccaatattgagcacgtttaaaatcattcatttcagcaagttgattattaggaatagcaaccataacttcaattccactaccagccaaagcagtcattgt |
33063283 |
T |
|
| Q |
101 |
agtatcatctgcatcaaaaagcttaactttttgaatcccattatccttcaacatcttcacaacagtttctggtggtaacttgtgtgttgcttgtgtaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33063282 |
agtatcatctgcatcaaaaagcttaactttttgaatcccattatccttcaacatcttcacaacagtttctggtggtaacttgtgtgttgcttgtgtaccc |
33063183 |
T |
|
| Q |
201 |
cagttcacaccaagcccttccac |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33063182 |
cagttcacaccaagcccttccac |
33063160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 10253592 - 10253793
Alignment:
| Q |
22 |
aatcattcatttcagcaagttgattattaggaatagcaaccataacttcaattccactaccagccaaagcagtcattgtagtatcatctgcatcaaaaag |
121 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||||||||||| |||||||| || ||| | | ||| |||| || ||||| |||||||| | |
|
|
| T |
10253592 |
aatcactcatttcagctaattgattattaggaatagcaaccattacttcaatacctgacccaccaagtgcactcatagtttcttcatcagcatcaaataa |
10253691 |
T |
|
| Q |
122 |
cttaactttttgaatcccattatccttcaacatcttcacaacagtttctggtggtaacttgtgtgttgcttgtgtaccccagttcacaccaagcccttcc |
221 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||| | ||||| || |||||| || |||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
10253692 |
cttcactttttgaattccattatctttcaacatttgtacaactgtgtctggtttcaatggatgtgttgcttgtgttccccaattcacaccaagtccttcc |
10253791 |
T |
|
| Q |
222 |
ac |
223 |
Q |
| |
|
|| |
|
|
| T |
10253792 |
ac |
10253793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 1751795 - 1751746
Alignment:
| Q |
111 |
gcatcaaaaagcttaactttttgaatcccattatccttcaacatcttcac |
160 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||| ||||| |
|
|
| T |
1751795 |
gcatcaaaaagcttaactttttgaataccattatcttttaacattttcac |
1751746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University