View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_65 (Length: 239)
Name: NF10707_low_65
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45274302 - 45274525
Alignment:
| Q |
1 |
atatgtcaatgttatatgtatatatttctcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactct |
100 |
Q |
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| T |
45274302 |
atatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactct |
45274401 |
T |
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| Q |
101 |
ttcttcaatcataaggtacacaattaatcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtctt |
200 |
Q |
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| T |
45274402 |
ttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtctt |
45274501 |
T |
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| Q |
201 |
ggtaccggcagcaaagttctttct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
45274502 |
ggtaccggcagcaaagttctttct |
45274525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45282545 - 45282766
Alignment:
| Q |
1 |
atatgtcaatgttatatgtatatatttctcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactct |
100 |
Q |
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| T |
45282545 |
atatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactct |
45282644 |
T |
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| Q |
101 |
ttcttcaatcataaggtacacaattaatcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtctt |
200 |
Q |
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| T |
45282645 |
ttcttcattcataa-gtaaataattaattaaataaaat-aaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtctt |
45282742 |
T |
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| Q |
201 |
ggtaccggcagcaaagttctttct |
224 |
Q |
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| T |
45282743 |
gacaccagcagcaaagctctttct |
45282766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 45293958 - 45294154
Alignment:
| Q |
29 |
tcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttat--atactctttcttcaatcataaggtacacaatta |
126 |
Q |
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| T |
45293958 |
tcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaattt |
45294057 |
T |
|
| Q |
127 |
atcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttct |
224 |
Q |
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| T |
45294058 |
attaaataaaat-aaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttct |
45294154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 45302918 - 45303114
Alignment:
| Q |
29 |
tcttttcaatgtgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttat--atactctttcttcaatcataaggtacacaatta |
126 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| || ||| ||||||||| ||||||||||||||||| |
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| T |
45302918 |
tcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataaggtacacaattt |
45303017 |
T |
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| Q |
127 |
atcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttct |
224 |
Q |
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| T |
45303018 |
attaaataaaat-aaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccgttctttct |
45303114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 45270790 - 45270910
Alignment:
| Q |
19 |
tatatatttctcttttcaatgtgagtta-tgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggt |
117 |
Q |
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| T |
45270790 |
tatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggt |
45270889 |
T |
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| Q |
118 |
acacaattaatcaaataaaat |
138 |
Q |
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| T |
45270890 |
acacaattaattaaataaaat |
45270910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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