View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_low_66 (Length: 238)

Name: NF10707_low_66
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_low_66
NF10707_low_66
[»] scaffold0103 (2 HSPs)
scaffold0103 (125-223)||(5586-5684)
scaffold0103 (1-54)||(5755-5808)
[»] chr7 (2 HSPs)
chr7 (125-223)||(12808161-12808259)
chr7 (1-54)||(12808330-12808383)
[»] chr6 (3 HSPs)
chr6 (125-223)||(2634325-2634423)
chr6 (1-54)||(2634201-2634254)
chr6 (133-223)||(12084006-12084101)
[»] chr8 (2 HSPs)
chr8 (133-183)||(27261513-27261563)
chr8 (1-53)||(4638157-4638209)
[»] chr5 (2 HSPs)
chr5 (133-223)||(4807291-4807382)
chr5 (128-223)||(21837843-21837939)
[»] chr4 (1 HSPs)
chr4 (141-223)||(27897025-27897107)


Alignment Details
Target: scaffold0103 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 5684 - 5586
Alignment:
Q  125 tcacaaagctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactgnnnnnnntatgaaactacaatcaaaagcaaagacatcaac 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  5684 tcacaaagctttctacttgcataagaacaaactgcaggaaagagaagaaaactatactgaaaaaaatatgaaactacaatcaaaagcaaagacatcaac 5586  T

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Target: scaffold0103; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5808 - 5755
Alignment:
Q  1 ccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcagt 54  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5808 ccttatgcttgacaaccaagaaacctgcagaagaagttgagaaacataatcagt 5755  T

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Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 12808259 - 12808161
Alignment:
Q  125 tcacaaagctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactgnnnnnnntatgaaactacaatcaaaagcaaagacatcaac 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  12808259 tcacaaagctttctacttgcataagaacaaacagcaggaaagagaagaaaactatactgaaaaaaatatgaaactacaatcaaaagcaaagacatcaac 12808161  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12808383 - 12808330
Alignment:
Q  1 ccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcagt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808383 ccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcagt 12808330  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 2634325 - 2634423
Alignment:
Q  125 tcacaaagctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactgnnnnnnntatgaaactacaatcaaaagcaaagacatcaac 223  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  2634325 tcacaaagctttctacttgcataagaacaaactgcaggaaagagaagaaaactatactgaaaaaaatatgaaactacaatcaaaagcaaagacatcaac 2634423  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2634201 - 2634254
Alignment:
Q  1 ccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcagt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2634201 ccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcagt 2634254  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 12084006 - 12084101
Alignment:
Q  133 ctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactgnnnnnnnta-----tgaaactacaatcaaaagcaaagacatcaac 223  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||        |     |||||||||||||||||||||||||||||||    
T  12084006 ctttctacttgcataagaacaaaccgcaggaaagaaaagaaaactatactgaaaaaaaaaaaaaatgaaactacaatcaaaagcaaagacatcaac 12084101  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 27261513 - 27261563
Alignment:
Q  133 ctttctacttgcataagaacaaaccgcaggaaagagaagaaaactatactg 183  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27261513 ctttctacttgcataagaacaaaccgcaggaaagaaaagaaaactatactg 27261563  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4638157 - 4638209
Alignment:
Q  1 ccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcag 53  Q
    ||||||||||||  |||||||||||||||||||||||| | ||||||| ||||    
T  4638157 ccttatgcttgatgaccaagaaacctgcagaagaagataaaaaacatactcag 4638209  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 4807291 - 4807382
Alignment:
Q  133 ctttctacttgcataa-gaacaaaccgcaggaaagagaagaaaactatactgnnnnnnntatgaaactacaatcaaaagcaaagacatcaac 223  Q
    |||||||| ||||||| ||||||||||||| ||||| |||||||||||||||        ||||||||||||||||||||||||||||||||    
T  4807291 ctttctacctgcataaagaacaaaccgcagcaaagaaaagaaaactatactggaaaaaagatgaaactacaatcaaaagcaaagacatcaac 4807382  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 21837939 - 21837843
Alignment:
Q  128 caaagctttctacttgcataa-gaacaaaccgcaggaaagagaagaaaactatactgnnnnnnntatgaaactacaatcaaaagcaaagacatcaac 223  Q
    |||| |||||||| ||||||| ||||||||||||| ||||| |||||||||||||||        |||||||||||| |||||||||||||||||||    
T  21837939 caaaactttctacctgcataaagaacaaaccgcagcaaagaaaagaaaactatactggaaaaaagatgaaactacaaccaaaagcaaagacatcaac 21837843  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 27897025 - 27897107
Alignment:
Q  141 ttgcataagaacaaaccgcaggaaagagaagaaaactatactgnnnnnnntatgaaactacaatcaaaagcaaagacatcaac 223  Q
    |||||||| |||||||||||||||||| ||||||||||||||        |||||| |||| |||||||||| ||||||||||    
T  27897025 ttgcataaaaacaaaccgcaggaaagaaaagaaaactatactaaaaaaaatatgaacctacgatcaaaagcagagacatcaac 27897107  T

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