View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_69 (Length: 236)
Name: NF10707_low_69
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 39748067 - 39748273
Alignment:
| Q |
12 |
cagagagatgacaaaaattgatatgagataaaaagcagaagctttaataattcttgattcaagctgtatcatatttagcatgccaaagattctttcggaa |
111 |
Q |
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| T |
39748067 |
cagaaagatgacaaaaattgatatgagataaaaagcagaagctttaataattcttgattcaagctgtatcatatttagcatgccaaagattctttcggaa |
39748166 |
T |
|
| Q |
112 |
tgaacaaacatggtagcctgatttgtttcaatggtttcctataaagtacgaatattnnnnnnnnnncattaaggatatatgtatgtatatcaaataaaca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
39748167 |
tgaacaaacatggtagcctgatttgtttcaatggtttcctataaagtacgaatattaaaaaaaaatcattaaggatata--tatgtatatcaaataaaca |
39748264 |
T |
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| Q |
212 |
ctcaaaaac |
220 |
Q |
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||||||||| |
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| T |
39748265 |
ctcaaaaac |
39748273 |
T |
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