View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_7 (Length: 439)
Name: NF10707_low_7
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 3826210 - 3826622
Alignment:
| Q |
19 |
gaagacacccttgatttagagcgtaactaa----accctttagctaaataagcttaaaggatcccataacccatatacaaagaatgagcttatcattttt |
114 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3826210 |
gaagacacccttaatttagagcgtaactaattaaaccctttagctaaata-gcttaaaggatcccataacccatatacaaagaatgagcttatctatttt |
3826308 |
T |
|
| Q |
115 |
gaagccaatcggctcaaacgcactatcgagtttatataccaatcagaaaaataataatcaacttgtctaccctaccttaatgcgagttaggcttggttgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826309 |
gaagccaatcggctcaaacgcactatcgagtttatataccaatcagaaaaataataatcaacttgtctaccctaccttaatgcgagttaggcttggttgg |
3826408 |
T |
|
| Q |
215 |
acataaccataaatcttttgtatgtaggttcacacccattagtaaaaatagatataaaaggaaaagtaaatttacaaaatatgcatgcatgtgactgaat |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826409 |
acataaccataaatcttttgtatgtaggtgcacacccattagtaaaaatagatataaaaggaaaagtaaatttacaaaatatgcatgcatgtgactgaat |
3826508 |
T |
|
| Q |
315 |
aaacctatctccccttactacataccaaactcatgtaacatgtttgatttgttcctttcctnnnnnnnnttgatttgtttccacaacatcattccaatcc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
3826509 |
aaacctatctccccttactacataccaaactcatgtaacatgtttgatttgttcctttcctaaaaaaaattgatttg-ttccacaacatcattccaatcc |
3826607 |
T |
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| Q |
415 |
ccaaccttgcctttg |
429 |
Q |
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||||||||||||||| |
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| T |
3826608 |
ccaaccttgcctttg |
3826622 |
T |
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