View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10707_low_70 (Length: 236)
Name: NF10707_low_70
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_70 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 34980751 - 34980963
Alignment:
| Q |
1 |
ttttgtttaaaatctcacattacgatgacaattgcaacgtgatttttcttttatctttctctatctgatgtatttttatttggatatgaattagaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34980751 |
ttttgtttaaaatctcacattacgatgacaattgcaacgtgatttttcttttatctttctctatctgatgtatttttatttggatatgaattagaatcaa |
34980850 |
T |
|
| Q |
101 |
tggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagcttttcagatggagtagaaggaagctaggatnnnnnnnntgcatgcggta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
34980851 |
tggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagcttttcagatggagtagaaggaagctaggataaaacaaatgcatgtggta |
34980950 |
T |
|
| Q |
201 |
agttctataatat |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34980951 |
agttctataatat |
34980963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 34985426 - 34985525
Alignment:
| Q |
52 |
tatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagc |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
34985426 |
tatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgacggcattttacaacattgtctcaggagcaaggattctaggaagc |
34985525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 34993399 - 34993524
Alignment:
| Q |
52 |
tatctttctctatctgatgtatttttatttggatatgaattagaatcaatggtcgacggaattttacaacattgtcccaagagcaagaattctaggaagc |
151 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |||| |||| ||||||||||| |||||||| || ||||| | |
|
|
| T |
34993399 |
tatctttctctatctgatgtattattatttgaccatgaactagaatcaatggtgtacggcatttcacaacattgtctcaagagcagagataataggattc |
34993498 |
T |
|
| Q |
152 |
ttttcagatggagtagaaggaagcta |
177 |
Q |
| |
|
||| ||||||||||||| |||||||| |
|
|
| T |
34993499 |
tttacagatggagtagatggaagcta |
34993524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University