View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_low_71 (Length: 235)

Name: NF10707_low_71
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_low_71
NF10707_low_71
[»] chr6 (15 HSPs)
chr6 (71-225)||(17095606-17095768)
chr6 (18-225)||(16870317-16870514)
chr6 (17-160)||(17067026-17067177)
chr6 (166-225)||(16655782-16655841)
chr6 (168-225)||(16784994-16785051)
chr6 (156-219)||(16794920-16794983)
chr6 (168-225)||(16778898-16778955)
chr6 (18-123)||(16655619-16655728)
chr6 (18-81)||(16985008-16985068)
chr6 (124-189)||(16985125-16985190)
chr6 (161-225)||(17067196-17067260)
chr6 (166-209)||(16558479-16558522)
chr6 (18-73)||(16558631-16558686)
chr6 (152-197)||(16841534-16841579)
chr6 (145-198)||(16975726-16975779)
[»] chr3 (2 HSPs)
chr3 (74-217)||(7055669-7055816)
chr3 (156-225)||(38941733-38941802)
[»] scaffold0256 (1 HSPs)
scaffold0256 (168-225)||(6881-6938)
[»] scaffold0133 (4 HSPs)
scaffold0133 (168-225)||(6222-6279)
scaffold0133 (156-225)||(10558-10627)
scaffold0133 (156-207)||(15855-15906)
scaffold0133 (17-72)||(6068-6120)
[»] chr8 (1 HSPs)
chr8 (111-217)||(13375738-13375853)
[»] chr2 (1 HSPs)
chr2 (165-212)||(20151580-20151627)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 17095606 - 17095768
Alignment:
Q  71 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaatt--------ttaccacgaaatgttggttttacatcagattccaattta 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||| |||||||| |    
T  17095606 tttgatatagtaagacaaaagataaatgaacaagtaaagagattcattaaattaaattaaattaccacgaaatgttggttttgcatcagtttccaattca 17095705  T
Q  163 aattcaggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||    
T  17095706 aattcaggaatgtgagctatctaatgccaatcttcacctattcctctcttacatctcttctcc 17095768  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 16870514 - 16870317
Alignment:
Q  18 atattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatat---agtaagacaaaagataaatgaacaagtaaagagatt 114  Q
    ||||| || |||||||||||||||||||||||||||| |||||||| || |||||| ||||   ||||| |||||||| ||| |||    | ||          
T  16870514 atattatctgcacacattgttcaatataataagtctataatcacaccatctaattttatattatagtaacacaaaagacaaaggaa----tcaa------ 16870425  T
Q  115 cattaaattttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgccaatcttcagctattcctctcttac 214  Q
     ||||||||  ||||| |||||||||||||  |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  16870424 -attaaatt--accacaaaatgttggttttttatcagattccaaataaaattcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgc 16870328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 17067026 - 17067177
Alignment:
Q  17 aatattctcagcacacattgttcaatataataagtctaaaatcacactatataatttga---tatagtaagacaaaagataaatg--aacaagtaaagag 111  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |   ||||||||||||||| | ||| |  || || | |||||    
T  17067026 aatattctctgcacacattgttcaatataataagtctaaaatcacagtatataattttattctatagtaagacaaaaaagaaaggaaaaaaaattaagag 17067125  T
Q  112 attcattaaatt---ttaccacgaaatgttggttttacatcagattccaatt 160  Q
    |||| |||||||   ||||||| || |||||||||| ||||||||| |||||    
T  17067126 attcgttaaattaaattaccacaaattgttggttttgcatcagattgcaatt 17067177  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 16655782 - 16655841
Alignment:
Q  166 tcaggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  16655782 tcaggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctcc 16655841  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 16784994 - 16785051
Alignment:
Q  168 aggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  16784994 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctcc 16785051  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 16794920 - 16794983
Alignment:
Q  156 caatttaaattcaggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctc 219  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| || |||||||||| ||||||    
T  16794920 caattcaaattcaggaacgtgagctatcttatgccaatcttcaccttttcctctcttgcatctc 16794983  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 16778898 - 16778955
Alignment:
Q  168 aggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    ||||||||||||||||||||||||||||||| || |||||||||| ||||||| ||||    
T  16778898 aggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctcc 16778955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 16655619 - 16655728
Alignment:
Q  18 atattctcagcacacattgttcaatataataagtctaaaatcacactatataatttga---tatagtaagacaaaagataaatgaa-caagtaaagagat 113  Q
    ||||| || |||||||||||||||||||||||||||| |||||||| || | ||||||   |||||||| |||||||| ||| ||| ||| ||||| |||    
T  16655619 atattatctgcacacattgttcaatataataagtctataatcacaccatctgatttgatattatagtaacacaaaagacaaaggaatcaaataaagggat 16655718  T
Q  114 tcattaaatt 123  Q
    || |||||||    
T  16655719 tcgttaaatt 16655728  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 16985008 - 16985068
Alignment:
Q  18 atattctcagcacacattgttcaatataataagtctaaaatcacactatataatttgatatagt 81  Q
    |||||||| ||||| ||||||||||||||   |||||||||||||| |||||||||||||||||    
T  16985008 atattctctgcacatattgttcaatataa---gtctaaaatcacaccatataatttgatatagt 16985068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 16985125 - 16985190
Alignment:
Q  124 ttaccacgaaatgttggttttacatcagattccaatttaaattcaggaatgtgagctatcttatgc 189  Q
    |||||| | |||||||||||| || ||||||| || | ||||||||||||||||||||||||||||    
T  16985125 ttaccagggaatgttggttttgcaccagattcaaaataaaattcaggaatgtgagctatcttatgc 16985190  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 17067196 - 17067260
Alignment:
Q  161 taaattcaggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    |||||||||||||||||||||| ||||||||||||||| || ||||| ||||  |||||| ||||    
T  17067196 taaattcaggaatgtgagctattttatgccaatcttcaccttttcctatcttcaatctcttctcc 17067260  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 16558522 - 16558479
Alignment:
Q  166 tcaggaatgtgagctatcttatgccaatcttcagctattcctct 209  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||    
T  16558522 tcaggaatgtgagctatcttatgccaatcgtcacctattcctct 16558479  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 16558686 - 16558631
Alignment:
Q  18 atattctcagcacacattgttcaatataataagtctaaaatcacactatataattt 73  Q
    ||||| || |||||||||||||||||||||||||||| |||||||| || ||||||    
T  16558686 atattatctgcacacattgttcaatataataagtctataatcacaccatctaattt 16558631  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 16841534 - 16841579
Alignment:
Q  152 attccaatttaaattcaggaatgtgagctatcttatgccaatcttc 197  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||    
T  16841534 attccaatttcaatctaggaatgtgagctatcttatgccaatcttc 16841579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 16975779 - 16975726
Alignment:
Q  145 acatcagattccaatttaaattcaggaatgtgagctatcttatgccaatcttca 198  Q
    |||||||||||||||||||||| |||||  |||||| |||||| ||||||||||    
T  16975779 acatcagattccaatttaaatttaggaacatgagctgtcttataccaatcttca 16975726  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 7055816 - 7055669
Alignment:
Q  74 gatatagtaagacaaaagataaatgaacaag-taaagagattcattaaatt---ttaccacgaaatgttggttttacatcagattccaatttaaattcag 169  Q
    |||||||||||| |||||| ||| ||| ||  ||||| |||| ||||||||   ||||||| ||||| || |||| |||||||||||||| | ||| | |    
T  7055816 gatatagtaagaaaaaagagaaaggaataatataaagggattgattaaattaaattaccacaaaatgatgtttttgcatcagattccaatatcaatgccg 7055717  T
Q  170 gaatgtgagctatcttatgccaatcttcagctattcctctcttacatc 217  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  7055716 gaatgtgagctatcttatgccaatcttcacctactcctctcttgcatc 7055669  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 38941802 - 38941733
Alignment:
Q  156 caatttaaattcaggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| ||||    
T  38941802 caattcaaattcaggaatgtgagctatcttatgccaatcttcaccttttcctctcttgcatctcttctcc 38941733  T

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Target: scaffold0256 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 6881 - 6938
Alignment:
Q  168 aggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  6881 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctcc 6938  T

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Target: scaffold0133 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 6222 - 6279
Alignment:
Q  168 aggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  6222 aggaatgtgagctatcttatgccaatcttcacctattcctctcttgcatctcttctcc 6279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 10558 - 10627
Alignment:
Q  156 caatttaaattcaggaatgtgagctatcttatgccaatcttcagctattcctctcttacatctctgctcc 225  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||    
T  10558 caattcaacttcaggaatgtgagctatcttatgccaatcttcacctatacctctcttgcatctcttctcc 10627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 15855 - 15906
Alignment:
Q  156 caatttaaattcaggaatgtgagctatcttatgccaatcttcagctattcct 207  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| || |||||    
T  15855 caattgaaattgaggaatgtgagctatcttatgccaatcttcaccttttcct 15906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 6068 - 6120
Alignment:
Q  17 aatattctcagcacacattgttcaatataataagtctaaaatcacactatataatt 72  Q
    ||||||||| ||||||||||||||||   |||||||||||||||||| ||||||||    
T  6068 aatattctctgcacacattgttcaat---ataagtctaaaatcacaccatataatt 6120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 13375738 - 13375853
Alignment:
Q  111 gattcattaaatt---ttaccacgaaatgttggttttacatca------gattccaatttaaattcaggaatgtgagctatcttatgccaatcttcagct 201  Q
    |||||||||||||   ||||||| ||||||||||||| |||||      |||||||||| || |||||| |||||||||||||||| |||||||||  ||    
T  13375738 gattcattaaattaaattaccacaaaatgttggttttgcatcaaatttagattccaattcaacttcaggtatgtgagctatcttatcccaatcttctcct 13375837  T
Q  202 attcctctcttacatc 217  Q
    ||||||||||| ||||    
T  13375838 attcctctcttgcatc 13375853  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 20151580 - 20151627
Alignment:
Q  165 ttcaggaatgtgagctatcttatgccaatcttcagctattcctctctt 212  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||    
T  20151580 ttcaggaatgttagctatcttatgccaatcttcacctattcctctctt 20151627  T

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