View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_72 (Length: 230)
Name: NF10707_low_72
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 13828505 - 13828721
Alignment:
| Q |
1 |
aaatgagctgacacaccgaacggttcagctatagatacgcccaaccaatatcgaatcttaagtacacacaaaaagtctaacaacacaatcatcctgagaa |
100 |
Q |
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| T |
13828505 |
aaatgagctgacacaccaaacggttcacctgtagatacgcccagccaatatcgaatcttaagtacacacaaagagtctaacaacacaatcatcctgagaa |
13828604 |
T |
|
| Q |
101 |
tctatattatgatcattcctgatgataaacaaaaaataaccctataaatatcaaataggatcacttttatagtcatcaaataatatttaggcttaaaagc |
200 |
Q |
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| T |
13828605 |
tctatattatgatcatttctgatgataaacaaagaataaccctataaatatcaaataggatcacttttatagtcatcaaataatatttaggcttaaatgc |
13828704 |
T |
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| Q |
201 |
acttttcaccccctatg |
217 |
Q |
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||||||||||||||||| |
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| T |
13828705 |
acttttcaccccctatg |
13828721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 13836767 - 13836695
Alignment:
| Q |
64 |
acacacaaaaagtctaacaacacaatcatcctgagaatctatattatgatcattcctgatgataaacaaaaaa |
136 |
Q |
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|
|||||||||||||||||||||||||||||||| | |||| |||||||||||| ||||| | |||||||||||| |
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| T |
13836767 |
acacacaaaaagtctaacaacacaatcatcctcaaaatcaatattatgatcactcctggttataaacaaaaaa |
13836695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26254299 - 26254357
Alignment:
| Q |
1 |
aaatgagctgacacaccgaacggttcagctatagatacgcccaaccaatatcgaatctt |
59 |
Q |
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| T |
26254299 |
aaatgagttgacacaccaaacggctcggctgtagatacgcccaaccagtaccgaatctt |
26254357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 5490984 - 5490952
Alignment:
| Q |
185 |
atttaggcttaaaagcacttttcaccccctatg |
217 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
5490984 |
atttaggcttaaatgcacttttcaccccctatg |
5490952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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