View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_75 (Length: 225)
Name: NF10707_low_75
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 53499356 - 53499163
Alignment:
| Q |
14 |
aagaagggagagaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactcc |
113 |
Q |
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| T |
53499356 |
aagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactcc |
53499257 |
T |
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| Q |
114 |
ttttatgtacgattgcatttatgttttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctac |
207 |
Q |
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| T |
53499256 |
ttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctac |
53499163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 53491761 - 53491570
Alignment:
| Q |
16 |
gaagggagagaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactcctt |
115 |
Q |
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| T |
53491761 |
gaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctc |
53491662 |
T |
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| Q |
116 |
ttatgtacgattgcatttatgttttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctac |
207 |
Q |
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| T |
53491661 |
ttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctac |
53491570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 16070464 - 16070390
Alignment:
| Q |
14 |
aagaagggagagaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttttaatgtcta |
88 |
Q |
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| T |
16070464 |
aagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 16070303 - 16070249
Alignment:
| Q |
153 |
taacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctac |
207 |
Q |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctac |
16070249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 45355012 - 45355076
Alignment:
| Q |
15 |
agaagggagagaaagcaatggtatggcagaactcatggggctattctactcgaactgtaagcttt |
79 |
Q |
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| T |
45355012 |
agaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt |
45355076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 45355140 - 45355200
Alignment:
| Q |
145 |
cgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgct |
205 |
Q |
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| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgct |
45355200 |
T |
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