View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_low_77 (Length: 217)

Name: NF10707_low_77
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_low_77
NF10707_low_77
[»] chr4 (16 HSPs)
chr4 (11-217)||(27570182-27570388)
chr4 (18-217)||(27420213-27420415)
chr4 (11-217)||(27425614-27425819)
chr4 (18-213)||(27415432-27415627)
chr4 (11-213)||(27566088-27566289)
chr4 (102-210)||(27412562-27412670)
chr4 (16-213)||(27563483-27563688)
chr4 (101-217)||(27423113-27423229)
chr4 (102-216)||(27444928-27445033)
chr4 (103-148)||(27498326-27498371)
chr4 (174-217)||(27554273-27554316)
chr4 (166-213)||(27585644-27585691)
chr4 (103-148)||(27501228-27501273)
chr4 (103-148)||(27516793-27516838)
chr4 (169-213)||(27469419-27469463)
chr4 (169-213)||(27486942-27486986)
[»] chr3 (2 HSPs)
chr3 (176-217)||(38025008-38025049)
chr3 (176-217)||(38031460-38031501)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 27570388 - 27570182
Alignment:
Q  11 cacagatcattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagtttttatttaaaaaccatttattctcaagtgttaacacata 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570388 cacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagtttttatttaaaaaccatttattctcaagtgttaacacata 27570289  T
Q  111 caaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgc 210  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570288 caaaaatgggttttcgtccccctggtatcatcagaagggcatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgc 27570189  T
Q  211 agtatat 217  Q
    |||||||    
T  27570188 agtatat 27570182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 27420213 - 27420415
Alignment:
Q  18 cattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagttt---ttatttaaaaaccatttattctcaagtgttaacacatacaaa 114  Q
    |||||||||||||||||||||| || | |||||||||||  ||||||||||||||   ||||||  ||||||||| |||| |||| |||||||||||||     
T  27420213 cattcacatcctaaagcattcagatttcaaaaacttggtctttgcttaaaagtttattttatttttaaaccatttcttctaaagttttaacacatacaac 27420312  T
Q  115 aatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagta 214  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  27420313 aatgggttttcgtttccctggtatcatcagaaaggcatcattttctgcaaaccgatcagcttcaaaatctgtggacgtgccaaagggatatcttgcagta 27420412  T
Q  215 tat 217  Q
    |||    
T  27420413 tat 27420415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 27425614 - 27425819
Alignment:
Q  11 cacagatcattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagtttttatttaaaaaccatttattctcaagtgttaacacata 110  Q
    |||| ||||||||||||||||| ||||| ||| | ||||||||| || ||||||| | || ||| |||||||   | | |||||||||| ||||||||||    
T  27425614 cacaaatcattcacatcctaaaccattccaatttcaaaaacttgcttcttgcttacaggtctttttttaaaactgaat-attctcaagttttaacacata 27425712  T
Q  111 caaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgc 210  Q
    ||| |||||||||||||||  ||||||||||||||| || ||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  27425713 caacaatgggttttcgttttgctggtatcatcagaaaggcatcattttctgcaaaccgatcagcttcgaaagctgtggacgtgccaaagggatatcttgc 27425812  T
Q  211 agtatat 217  Q
    |||||||    
T  27425813 agtatat 27425819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 27415432 - 27415627
Alignment:
Q  18 cattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagttt-ttatttaaaaaccatttattctcaagtgttaacacatacaaaaa 116  Q
    ||||||||||||||||||||||  | | ||||||||| ||||||||  ||  | | |||||| ||||| |||| ||||||||| ||||||||||||| ||    
T  27415432 cattcacatcctaaagcattcagttttcaaaaacttg-ttattgctacaatttatcttattttaaaacaatttcttctcaagttttaacacatacaacaa 27415530  T
Q  117 tgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagt 213  Q
    ||||||||||| ||||| |||||||||||| |  ||| ||||||| || ||||  |  |||||||| ||||||||||||||||||||||||||||||    
T  27415531 tgggttttcgtgtccctagtatcatcagaaagtcatcattttctgcaagccgagtaatttcaaaagttgtggatgtgccaaagggatatcttgcagt 27415627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 27566289 - 27566088
Alignment:
Q  11 cacagatcattcacatcctaaagcattcaaatctg-aaaaacttggttattgcttaaaagtttttatttaaaaaccatttattctcaagtgttaacacat 109  Q
    |||| ||||||||||||||||| ||||| ||| |  ||||||||| || ||||||| |||| ||| ||  ||||||| || ||||||||| | ||| |||    
T  27566289 cacaaatcattcacatcctaaaccattccaatttccaaaaacttgcttcttgcttacaagtctttttt--aaaaccaatttttctcaagtttgaacgcat 27566192  T
Q  110 acaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttg 209  Q
    |||  ||||||||||||||||||| |||| |||| ||||| ||| |||  |||||||||| ||| |||||||| |||||| |||||||||||||||||||    
T  27566191 acagcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttggaaaccgagcagtttcaaaagttgtggacgtgccaaagggatatcttg 27566092  T
Q  210 cagt 213  Q
    ||||    
T  27566091 cagt 27566088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 27412562 - 27412670
Alignment:
Q  102 taacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaaggg 201  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||| ||| |||||||||||| ||  ||||||||||    
T  27412562 taacacatacaaaaatgggttttcgtttctctggtatcatcagaagggcatcattttctgcaaaccgagcagtttcaaaagctgttgacatgccaaaggg 27412661  T
Q  202 atatcttgc 210  Q
    |||| ||||    
T  27412662 atatattgc 27412670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 27563688 - 27563483
Alignment:
Q  16 atcattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagtt---------tttatttaaaaaccatttattctcaagtgttaaca 106  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||         ||| ||||||||    || ||||||||| ||||||    
T  27563688 atcattcacatcctaaagcattcaaatttcaaaaacttggttattgcttaaaagtttttttgttctttttttaaaaa----ttcttctcaagttttaaca 27563593  T
Q  107 catacaaaaatgggttttcgtttccctggtatcatcagaagg---gaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggat 203  Q
    ||  ||  ||||||||||||||| ||||||||||| ||||||     ||| ||| ||  || |||||||| | |||||| |||||| ||||||||||| |    
T  27563592 cactcagcaatgggttttcgtttacctggtatcattagaaggtcatcatcgtttacttcaagccgatcagttacaaaagttgtggacgtgccaaagggct 27563493  T
Q  204 atcttgcagt 213  Q
    ||||||||||    
T  27563492 atcttgcagt 27563483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 27423113 - 27423229
Alignment:
Q  101 ttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagg 200  Q
    ||||||||||||| ||||||| | |||||| ||||||| ||||||||||  || ||||||| ||||||| ||   |||||||||| |||  ||||||||     
T  27423113 ttaacacatacaacaatgggtatccgtttctctggtattatcagaagggcctcattttctgcaaaccgagcaatatcaaaagctgcggacatgccaaaga 27423212  T
Q  201 gatatcttgcagtatat 217  Q
    |||||||||| ||||||    
T  27423213 gatatcttgctgtatat 27423229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 27445033 - 27444928
Alignment:
Q  102 taacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaaggg 201  Q
    |||||||||||| |||||||||||||||  | ||||||||||||||||         ||| ||||| | || |||||||||  |||||||||||||||||    
T  27445033 taacacatacaagaatgggttttcgtttaaccggtatcatcagaaggg---------ctgcaaaccaaacatcttcaaaaggcgtggatgtgccaaaggg 27444943  T
Q  202 atatcttgcagtata 216  Q
    |||||||||||||||    
T  27444942 atatcttgcagtata 27444928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 27498326 - 27498371
Alignment:
Q  103 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 148  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||    
T  27498326 aacacatacgaaaatgggttttcgtttaccaggtatcatcagaagg 27498371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 27554273 - 27554316
Alignment:
Q  174 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatat 217  Q
    |||||||||  |||||||||||||||||||| ||||||||||||    
T  27554273 cttcaaaaggagtggatgtgccaaagggataccttgcagtatat 27554316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 27585644 - 27585691
Alignment:
Q  166 ccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagt 213  Q
    |||||||| |||||||| |||||| ||||||||||||||||| |||||    
T  27585644 ccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagt 27585691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 27501228 - 27501273
Alignment:
Q  103 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 148  Q
    ||||||||||| ||||||||||||||| ||||||||| | ||||||    
T  27501228 aacacatacaagaatgggttttcgtttacctggtatcctaagaagg 27501273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 27516838 - 27516793
Alignment:
Q  103 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 148  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| ||||    
T  27516838 aacacatacaacaatgggttttcgtttacctagtatcatcaaaagg 27516793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 27469419 - 27469463
Alignment:
Q  169 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagt 213  Q
    |||| |||||||||||||||| || |||||||||||||| |||||    
T  27469419 atcatcttcaaaagctgtggacgttccaaagggatatctagcagt 27469463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 27486942 - 27486986
Alignment:
Q  169 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagt 213  Q
    |||| |||||||||||||||| || |||||||||||||| |||||    
T  27486942 atcatcttcaaaagctgtggacgttccaaagggatatctagcagt 27486986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 38025049 - 38025008
Alignment:
Q  176 tcaaaagctgtggatgtgccaaagggatatcttgcagtatat 217  Q
    |||||||||||| |||| |||||||| |||||||||||||||    
T  38025049 tcaaaagctgtgaatgtaccaaagggctatcttgcagtatat 38025008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 38031501 - 38031460
Alignment:
Q  176 tcaaaagctgtggatgtgccaaagggatatcttgcagtatat 217  Q
    |||||||||||| |||| |||||||| |||||||||||||||    
T  38031501 tcaaaagctgtgaatgtaccaaagggctatcttgcagtatat 38031460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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