View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10707_low_86 (Length: 204)

Name: NF10707_low_86
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10707_low_86
NF10707_low_86
[»] chr5 (11 HSPs)
chr5 (14-190)||(10562845-10563021)
chr5 (14-184)||(10742923-10743093)
chr5 (14-190)||(10719113-10719289)
chr5 (14-184)||(10749236-10749406)
chr5 (14-184)||(10765336-10765506)
chr5 (42-190)||(11050087-11050235)
chr5 (51-120)||(9838613-9838682)
chr5 (45-130)||(10556769-10556854)
chr5 (69-134)||(19608136-19608201)
chr5 (69-119)||(7190875-7190925)
chr5 (51-133)||(10609565-10609647)
[»] chr6 (6 HSPs)
chr6 (14-184)||(12897383-12897553)
chr6 (14-184)||(12955896-12956066)
chr6 (14-184)||(12930094-12930264)
chr6 (14-184)||(12905004-12905174)
chr6 (14-184)||(12946459-12946629)
chr6 (14-70)||(12955618-12955674)
[»] chr2 (1 HSPs)
chr2 (14-184)||(17925627-17925797)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 10562845 - 10563021
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10562845 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 10562944  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcaccttttt 190  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10562945 agagttatagagttgaacctaagaagtaatcacttacatggatctttatctccctatgttggcaatctcaccttttt 10563021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 10743093 - 10742923
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    |||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  10743093 agaatcaatatcaagtgatccatataaagctcttgagtcttggaattcttccatccacttctgcaagtggtatggaatcacatgcaaccccatgcatcaa 10742994  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcac 184  Q
    |||||||| |||||| ||||| ||||| ||| |||||| |||  |||||| ||||||||||||||||||||    
T  10742993 agagttatagagttggacctaggaagttatcgcttacaaggacgtttatccccccatgttggcaatctcac 10742923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 10719289 - 10719113
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    ||||| |||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||    
T  10719289 agaatgaataaccagtgatccatatgaagctcttgaatcttggaattcttccatccacttctgcaagtggcatggaatcacatgcagccccatgcatgaa 10719190  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcaccttttt 190  Q
    |||||||  |||||||||||| || |  |||  |||||||||||||||||||||||||||||||||||| |||||||    
T  10719189 agagttacagagttgaacctaggaggatatctgttacatggatctttatctccccatgttggcaatctctccttttt 10719113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 10749406 - 10749236
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    |||||||||||| ||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||    
T  10749406 agaatcaatatcgagtgacccaaataaagctcttgaatcttggaattcttccatccacttctgcaagtggcatggaatcacatgcaaacccatgcatgaa 10749307  T
Q  114 agagttattgagttgaacctaagaagta-atcacttacatggatctttatctccccatgttggcaatctcac 184  Q
    |||||||   ||||||| || ||||| | |||| ||||||||||||||||| ||||||||||||||||||||    
T  10749306 agagttacaaagttgaa-cttagaaggatatcatttacatggatctttatcaccccatgttggcaatctcac 10749236  T

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Target: chr5; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 10765506 - 10765336
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || |||||||| |||||||| |||| || ||||||||||    
T  10765506 agaatcaatatcaagtgatccatataaagctcttgaatcttggaattcttccatccacttttgaaagtggcatggaatcacatgcagcctcatgcatcaa 10765407  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcac 184  Q
    || ||||  ||||||||||||  | |  |||| ||||||||||||||||||||| || |||| ||||||||    
T  10765406 agggttacagagttgaacctagcaggatatcagttacatggatctttatctccctatcttggtaatctcac 10765336  T

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Target: chr5; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 11050235 - 11050087
Alignment:
Q  42 gctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagttattgagttgaacctaagaagta 141  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| || |||||||||||||||||   |||||||||| ||||| |    
T  11050235 gctcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagcctcatgcatcaaagagttacaaagttgaacct-agaagga 11050137  T
Q  142 -atcacttacatggatctttatctccccatgttggcaatctcaccttttt 190  Q
     |||| || ||||||||  |||| ||| |||||||||||||||| |||||    
T  11050136 tatcagttgcatggatcaatatcaccctatgttggcaatctcactttttt 11050087  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 9838682 - 9838613
Alignment:
Q  51 tcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagtta 120  Q
    |||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  9838682 tcttggaattcttctatccacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagtta 9838613  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 10556769 - 10556854
Alignment:
Q  45 cttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagttattgagttgaa 130  Q
    ||||| |||||||||  ||| ||||| || ||||| ||| | |||||||| |||||| |||||||||||||||||| |||||||||    
T  10556769 cttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcaaagagttactgagttgaa 10556854  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 19608201 - 19608136
Alignment:
Q  69 cacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagttattgagttgaaccta 134  Q
    ||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||| || |||||||||    
T  19608201 cacttttgcaattggcatggaatcacatgcagccccatgcatcaaagagttatagaattgaaccta 19608136  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 7190875 - 7190925
Alignment:
Q  69 cacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagtt 119  Q
    ||||||||||||||| | |||||||| ||||  ||||||||||||||||||    
T  7190875 cacttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagtt 7190925  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 10609565 - 10609647
Alignment:
Q  51 tcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagttattgagttgaacct 133  Q
    |||||||||| ||||||||| || || |||||||  ||| |||| |||| | | ||||| ||||||||||| |||||||||||    
T  10609565 tcttggaatttttccatccatttatgtaagtggcgtggagtcacatgcagctctatgcaacaaagagttatagagttgaacct 10609647  T

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Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 12897383 - 12897553
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||| ||    
T  12897383 agaatcaatttccagtgacccatacaatgctcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaa 12897482  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcac 184  Q
     ||||||  ||||||| ||||| |||  |||| ||||||||||||||||||||||||||| ||||||||||    
T  12897483 cgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctcac 12897553  T

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Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 12955896 - 12956066
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||| ||    
T  12955896 agaatcaatttcaagtgacccatacaatgctcttgaatcttggaattcttccatccatttctgcaagtggcaaggaatcacatgcagccccatgcatgaa 12955995  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcac 184  Q
     ||||||  ||||||| ||||| |||  |||| ||||||||||||||||||||||||||| ||||||||||    
T  12955996 cgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctcac 12956066  T

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Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 12930094 - 12930264
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    |||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||| ||    
T  12930094 agaatcaataactagtgacccatacaatactcttgaatcttggaattcttccatccacttctgcaagtggcatggaatcacatgtagccccatgcatgaa 12930193  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcac 184  Q
     ||||||  ||||||| ||||| |||  |||| ||||||||||||||||||||||||||| ||||||||||    
T  12930194 cgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctcac 12930264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 12905004 - 12905174
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||| ||    
T  12905004 agaatcaataactagtgacccatacaatgctcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaa 12905103  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcac 184  Q
     ||||||  ||||||| ||||  |||  |||| |||||||||||||||||||||||||||  |||||||||    
T  12905104 cgagttacagagttgagcctagaaagatatcagttacatggatctttatctccccatgtttccaatctcac 12905174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 12946459 - 12946629
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||| |||||||||| ||    
T  12946459 agaatcaatttccagtgacccatacaaagctcttgaatcttggaattcatccattcacttctgcaagtggcatggaatcacatgcagccccatgcatgaa 12946558  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcac 184  Q
     ||||||   ||||||  |||  |||  |||| |||||||||||||||||||||||||||  |||||||||    
T  12946559 cgagttacacagttgactctagaaagatatcagttacatggatctttatctccccatgtttccaatctcac 12946629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 12955618 - 12955674
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatcca 70  Q
    ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  12955618 agaatcaatttctagtgacccatacaatgctcttgaatcttggaattcttccatcca 12955674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 17925797 - 17925627
Alignment:
Q  14 agaatcaatatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaa 113  Q
    ||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||| ||    
T  17925797 agaatcaatttctagtgacccatacaaagctcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaa 17925698  T
Q  114 agagttattgagttgaacctaagaagtaatcacttacatggatctttatctccccatgttggcaatctcac 184  Q
     ||||||  ||||||| ||||| |||  |||| ||||||||||||||||||||||||||| ||||||||||    
T  17925697 cgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctcac 17925627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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