View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10707_low_9 (Length: 435)
Name: NF10707_low_9
Description: NF10707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10707_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 29104638 - 29105039
Alignment:
| Q |
21 |
gacgatggattttctcaccgtggtgtaaactcttatacattcttttccataaccgttttttaccatgcactcagcaataattctcaaatcatccacagca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104638 |
gacgatggattttctcaccgtggtgtaaactcttatacattcttttccataaccgttttttaccatgcactcagcaataattctcaaatcatccacagca |
29104737 |
T |
|
| Q |
121 |
tcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcctccatcaaaagaacagaaagaagttctgg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104738 |
tcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcctccatcaaaagaacagaaagaagttctgg |
29104837 |
T |
|
| Q |
221 |
aggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattag |
320 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104838 |
aggatccgacagagaaggattcagcgtctaagcaggcctggttcatggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattag |
29104937 |
T |
|
| Q |
321 |
gttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttggtgaacgtggtgaatatactgaatggct |
420 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29104938 |
gttttgagcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttggttaacgtggtgaatatactgaatggct |
29105037 |
T |
|
| Q |
421 |
tc |
422 |
Q |
| |
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|| |
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| T |
29105038 |
tc |
29105039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 423
Target Start/End: Original strand, 29090384 - 29090779
Alignment:
| Q |
28 |
gattttctcaccgtggtgtaaactcttatacattcttttccataaccgttttttaccatgcactcagcaataattctcaaatcatccacagcatcggaag |
127 |
Q |
| |
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|||||||| |||||||||||||| ||| ||| |||||||| |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||| |
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| T |
29090384 |
gattttctaaccgtggtgtaaacgtttacacactcttttccgtaaccgttagaaaccatgcactcggcaataattttcaaatcatccaccacatcggaag |
29090483 |
T |
|
| Q |
128 |
aaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatcc |
227 |
Q |
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||| |||||| ||||||||||||||||||| |||| || || ||| || |||||| ||||||| ||||||||||||| ||||||||| || |||||| |
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| T |
29090484 |
aaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttccaccatcaaaagaaccgaaagaagtgctaaaggatct |
29090583 |
T |
|
| Q |
228 |
gacagagaaggattcagcgtctaagcaagcctggttcatggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgt |
327 |
Q |
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|| ||||||||||||| ||||||| | ||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29090584 |
gatggagaaggattcagagtctaagtatgcctggttcatggttaagatctggtagaattctttttggagcctcttcatagcaatttgcattaggttttgt |
29090683 |
T |
|
| Q |
328 |
gcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttggtgaacgtggtgaatatactgaatggcttca |
423 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
29090684 |
gcgtggatgagttctggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttggttaacgtggtgaatgtactgaatggcttca |
29090779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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