View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10708_10 (Length: 326)
Name: NF10708_10
Description: NF10708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10708_10 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 7427071 - 7426807
Alignment:
| Q |
12 |
tatactgtaatatactttctttcaatatcaatgaatatccatgaggaatattcagtttaatctctct--gtttcttaattcaagcaatcgaataacaata |
109 |
Q |
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| T |
7427071 |
tatactgtagtatactttctttcaatatcaatgaatatccatgaggaatattcagtttaatctctctttgtttcttaattcaagcaatcgaataacaata |
7426972 |
T |
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| Q |
110 |
atttgtgaattcaaagtaatgaaaattgaagtattcgacacttnnnnnnnnnnnntgatcttaagtaaaggaattagggttcgaacaccattcaagatgc |
209 |
Q |
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| T |
7426971 |
atttgtgaattcaaagtaatgaaaattgaagtattcgacactttaaaaaaaaaaatgatcttaagtaaaggaattagggttcgaacaccattcaagatgc |
7426872 |
T |
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| Q |
210 |
tgtcttaacaatttcagaattttggtcagttgaaggaggacttgtgaacccttttataatagtcc |
274 |
Q |
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| T |
7426871 |
cgtcctaacaatttcaaaattttggtcggttgaaggaggactcgtgaacccttttatagtagtcc |
7426807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 36856110 - 36856184
Alignment:
| Q |
17 |
tgtaatatactttctttcaatatcaatgaatatccatgaggaatattcagtttaatctctc--tgtttcttaattc |
90 |
Q |
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| T |
36856110 |
tgtaatatacattctttcaatc-caatgaatacccatgaggaatattgagcttaatctctctttgtttcttaattc |
36856184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 37776942 - 37776882
Alignment:
| Q |
17 |
tgtaatatactttctttcaatatcaatgaatatccatgaggaatattcagtttaatctctct |
78 |
Q |
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| T |
37776942 |
tgtaatatacattctttcaatc-caatgaatacccatgaggaatattcagtttaatctctct |
37776882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 43023702 - 43023629
Alignment:
| Q |
17 |
tgtaatatactttctttcaatatcaatgaatatccatgaggaatattcagtttaatctctc--tgtttcttaattc |
90 |
Q |
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|||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||||||| |
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| T |
43023702 |
tgtaatatacattctttcaat-tcaatgaatacccatgac-aatattcagtttaatctctctttgtttcttaattc |
43023629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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