View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10708_2 (Length: 427)

Name: NF10708_2
Description: NF10708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10708_2
NF10708_2
[»] chr8 (5 HSPs)
chr8 (149-402)||(34866594-34866847)
chr8 (153-364)||(34389554-34389765)
chr8 (160-293)||(10551708-10551841)
chr8 (172-259)||(9519055-9519142)
chr8 (210-315)||(37987529-37987634)
[»] chr1 (6 HSPs)
chr1 (153-359)||(41919796-41920002)
chr1 (153-347)||(24685050-24685243)
chr1 (155-334)||(4651145-4651322)
chr1 (189-292)||(17032835-17032939)
chr1 (172-262)||(31586261-31586351)
chr1 (195-247)||(24450450-24450501)
[»] chr7 (6 HSPs)
chr7 (153-359)||(38305574-38305780)
chr7 (153-318)||(3420200-3420365)
chr7 (153-294)||(47326411-47326552)
chr7 (159-292)||(37792712-37792845)
chr7 (193-334)||(38484915-38485055)
chr7 (193-249)||(12480298-12480355)
[»] chr4 (8 HSPs)
chr4 (153-359)||(30963777-30963983)
chr4 (177-291)||(16501154-16501268)
chr4 (173-277)||(31051212-31051316)
chr4 (158-334)||(35799957-35800133)
chr4 (155-249)||(46699473-46699566)
chr4 (174-236)||(4305075-4305135)
chr4 (161-263)||(38929125-38929227)
chr4 (175-234)||(7702937-7702994)
[»] chr6 (4 HSPs)
chr6 (153-369)||(16510829-16511045)
chr6 (155-274)||(12793536-12793655)
chr6 (155-221)||(9223377-9223443)
chr6 (374-403)||(16511068-16511097)
[»] chr3 (6 HSPs)
chr3 (153-347)||(19175830-19176023)
chr3 (153-334)||(20611145-20611325)
chr3 (154-293)||(1653458-1653597)
chr3 (153-270)||(17501774-17501891)
chr3 (156-236)||(30935940-30936017)
chr3 (155-223)||(25595151-25595219)
[»] chr2 (7 HSPs)
chr2 (153-357)||(39339372-39339574)
chr2 (149-272)||(31902921-31903044)
chr2 (155-268)||(2062247-2062360)
chr2 (155-262)||(22886030-22886137)
chr2 (155-277)||(27739145-27739268)
chr2 (193-258)||(29486398-29486463)
chr2 (179-235)||(25505550-25505606)
[»] chr5 (2 HSPs)
chr5 (195-293)||(27712380-27712478)
chr5 (179-235)||(8730301-8730357)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 149 - 402
Target Start/End: Original strand, 34866594 - 34866847
Alignment:
Q  149 aaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcgga 248  Q
    ||||||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  34866594 aaatatcctcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcgga 34866693  T
Q  249 accacaacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatt 348  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  34866694 accacaacccaggtcataaaaaggcggtcgcctgtgacaaggagaatgttttcgtcgccgtagtaaaagagaatcaatggtggagcaaaaatggcggatt 34866793  T
Q  349 tgaacaacactacccgcaacctactcacatcaccaccaccacacaacctaaact 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34866794 tgaacaacactacccgcaacctactcacatcaccaccaccacacaacctaaact 34866847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 153 - 364
Target Start/End: Original strand, 34389554 - 34389765
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||| |||||||||||| ||    
T  34389554 atcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagca 34389653  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaa 352  Q
    ||||||||||||| | || ||||| |||||||||||||||| ||  |||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||    
T  34389654 caacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgtcgccgtagtaaaagagaaccaatggtggagcaaaaacggcagatctgaa 34389753  T
Q  353 caacactacccg 364  Q
     |||||| ||||    
T  34389754 taacacttcccg 34389765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 10551841 - 10551708
Alignment:
Q  160 ccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccca 259  Q
    |||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||| ||||     
T  10551841 ccaagaaatagacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgacccc 10551742  T
Q  260 gatcataaaaaggcggccgcctgtgacaaggaga 293  Q
    |||||||||||||| | || | ||||||||||||    
T  10551741 gatcataaaaaggctgtcgtcggtgacaaggaga 10551708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 9519142 - 9519055
Alignment:
Q  172 cagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccca 259  Q
    |||||| ||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||| | |||||||||| | |||||||||    
T  9519142 cagcaatacaaacacaaatctagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaaccca 9519055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 315
Target Start/End: Original strand, 37987529 - 37987634
Alignment:
Q  210 aacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgt 309  Q
    ||||||| |||||||| |||||||||| | |||||||||| | ||||| ||||| |||| | ||  ||||| ||||||||||||  |||| || |||||     
T  37987529 aacaacataacacgggcagcgacgccggtctgaagcggaaactcaacctagatcgtaaacacgcacccgccggtgacaaggagaaggcttccggcaccga 37987628  T
Q  310 agtaaa 315  Q
    ||||||    
T  37987629 agtaaa 37987634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 153 - 359
Target Start/End: Complemental strand, 41920002 - 41919796
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| | |||||| | |||||||||||||||    
T  41920002 atcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaacca 41919903  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaa 352  Q
    ||||||||||||| ||| |||||| |||||||||||||||| ||  |||||  |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  41919902 caacccagatcattaaatggcggcagcctgtgacaaggagaatgtgttcgttgccgtagtaaaagagaaccaatggtggagcaaaaacggcggatctgaa 41919803  T
Q  353 caacact 359  Q
    |||||||    
T  41919802 caacact 41919796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 153 - 347
Target Start/End: Original strand, 24685050 - 24685243
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||| ||||||||||||||||||| ||  |||| |||| ||||||||||||||||| |||||||||| |||||||| ||||||    
T  24685050 atcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcagcgacgccggtttgaagcagaacca 24685149  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggat 347  Q
    ||||||| |||||||||||  |||||||||||||||||||| ||  |||||| ||||||||||| |||| ||||||||||||||||| |||||||    
T  24685150 caacccatatcataaaaagctggccgcctgtgacaaggagaatgtgttcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaatggcggat 24685243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 334
Target Start/End: Complemental strand, 4651322 - 4651145
Alignment:
Q  155 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccaca 254  Q
    ||||||||||||| || |||||||||||||||| |||  ||||||||||||| | |||||||||||||  | |||||| ||| ||||||||||||  |||    
T  4651322 cctcaccaagaaacagacagcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaa--aca 4651225  T
Q  255 acccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagc 334  Q
    || | |||  ||||||||| |||| | |||| |||||||   | |  ||| ||| |||||||||||||||||||||||||    
T  4651224 actccgattgtaaaaaggcagccgtcagtgataaggagaagacatctgtcgccggagtaaaagagaatcaatggtggagc 4651145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 17032939 - 17032835
Alignment:
Q  189 atctagaggaagacgaaatccaacaac-aaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgaca 287  Q
    ||||||||||||||||||||||||||| ||||||| || || ||| ||| | |||||| ||| |||||||| ||||| ||||| | ||||||| ||||||    
T  17032939 atctagaggaagacgaaatccaacaacaaaaacacaggtagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgaca 17032840  T
Q  288 aggag 292  Q
    |||||    
T  17032839 aggag 17032835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 31586261 - 31586351
Alignment:
Q  172 cagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagat 262  Q
    |||||||||  ||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||| | |||||||| | ||| ||||||||    
T  31586261 cagcaacactgacacaaatccagagaaagacgaaacccaacaacaaaacacgggcagcgacgccggtctgaagcgggaacacgacccagat 31586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 24450450 - 24450501
Alignment:
Q  195 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcgg 247  Q
    ||||||| |||| |||||||||||||||||| |||||||| | ||||||||||    
T  24450450 aggaagatgaaacccaacaacaaaacacgggcagcgacgcag-tttgaagcgg 24450501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 153 - 359
Target Start/End: Complemental strand, 38305780 - 38305574
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||    
T  38305780 atcctcaccaagaaacaagcaacaacacaaacatcaatctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaacca 38305681  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaa 352  Q
    ||||||| |||||  ||||||||||| ||||||||| |||| ||| |||||| |||||||||||||||  ||||||||||||||||||||||||| ||||    
T  38305680 caacccatatcatttaaaggcggccgactgtgacaacgagaatgcgttcgtcgccgtagtaaaagagagccaatggtggagcaaaaacggcggatatgaa 38305581  T
Q  353 caacact 359  Q
    || ||||    
T  38305580 cagcact 38305574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 153 - 318
Target Start/End: Original strand, 3420200 - 3420365
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||| |||||||  ||||||| ||||||||||||||| | |||||||||||||| | |||||||||| || ||||||||||||    
T  3420200 atcctcaccaagaaacaagcaacaacacatgcataaatttagaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaacca 3420299  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaaga 318  Q
    ||||| ||||||||||||||||| | ||||| ||| ||||| ||| |||||| |||||||||||||    
T  3420300 caacctagatcataaaaaggcggtctcctgtaacagggagaatgcgttcgtcgccgtagtaaaaga 3420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 153 - 294
Target Start/End: Original strand, 47326411 - 47326552
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| | || ||    
T  47326411 atcctcaccaagaaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccgatttgaagtgaaaaca 47326510  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagag 294  Q
    ||||| | |||||| ||||||||||||| |||||||||||||    
T  47326511 caaccgaaatcatagaaaggcggccgccggtgacaaggagag 47326552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 37792845 - 37792712
Alignment:
Q  159 accaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccc 258  Q
    ||||||||| || ||||||||||||||   ||| |||| |||| |||| |||||| ||||||||||  | |||||||| |||||||||||| ||||||||    
T  37792845 accaagaaacagacagcaacacaaacacggatcaagagaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaaccc 37792746  T
Q  259 agatcataaaaaggcggccgcctgtgacaaggag 292  Q
    | ||| |||||||||   |||| |||||||||||    
T  37792745 atatcgtaaaaaggcaatcgccggtgacaaggag 37792712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 334
Target Start/End: Complemental strand, 38485055 - 38484915
Alignment:
Q  193 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggag 292  Q
    |||||||||||||| |  ||||||||||| ||| |||||||||| |||||||||||| ||||||||  ||| |||||||| ||||| | |||||||||||    
T  38485055 agaggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaaccc-catcgtaaaaaggtggccgtcagtgacaaggag 38484957  T
Q  293 agtgctttcgtcaccgtagtaaaagagaatcaatggtggagc 334  Q
    |   | |  ||| ||| ||||||| |||| ||||||||||||    
T  38484956 aagacatctgtcgccggagtaaaatagaaacaatggtggagc 38484915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 12480355 - 12480298
Alignment:
Q  193 agaggaagac-gaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 249  Q
    |||||||||| |||| |||||||||||||||| | |||||||||| ||||||| ||||    
T  12480355 agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaagtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 153 - 359
Target Start/End: Complemental strand, 30963983 - 30963777
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||| |||||||    
T  30963983 atcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaacca 30963884  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaa 352  Q
    |||||||||||||||||||  || ||||||||||||||||| ||| ||||||   |||||||||||||| ||||||||||| ||||||||||||| ||||    
T  30963883 caacccagatcataaaaagatggtcgcctgtgacaaggagaatgcgttcgtcgttgtagtaaaagagaaccaatggtggagaaaaaacggcggatctgaa 30963784  T
Q  353 caacact 359  Q
    || ||||    
T  30963783 cagcact 30963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 16501268 - 16501154
Alignment:
Q  177 acacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggc 276  Q
    ||||||||| |||| ||||||||||| ||| ||||||||| |||| ||| |||||||||| ||||||| |||| ||||||||| ||| || |||| ||||    
T  16501268 acacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaagtggaatcacaacccaaatcgtataaagacggc 16501169  T
Q  277 cgcctgtgacaagga 291  Q
    |||| ||||||||||    
T  16501168 cgccggtgacaagga 16501154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 31051212 - 31051316
Alignment:
Q  173 agcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaagg 272  Q
    |||||||| |||| ||||||| ||||||| | || |||||||||||||||||| |||||||||| | |||||||||  ||||||||| ||| ||||||||    
T  31051212 agcaacaccaacacaaatctaaaggaagatgtaacccaacaacaaaacacgggcagcgacgccggtctgaagcggacacacaacccaaatcgtaaaaagg 31051311  T
Q  273 cggcc 277  Q
    |||||    
T  31051312 cggcc 31051316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 334
Target Start/End: Complemental strand, 35800133 - 35799957
Alignment:
Q  158 caccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacc 257  Q
    |||||||||| ||||||||||||||| | | ||||| || || |||||| | |  | ||||||||||| | ||||||||||||||| ||||| || ||||    
T  35800133 caccaagaaacaggcagcaacacaaatacatatctaaagaaaaacgaaacctattagcaaaacacgggcaacgacgccgatttgaaacggaaacataacc 35800034  T
Q  258 cagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagc 334  Q
    || | | ||||||||||| || | || |||||||||  || | |||||||| |||| ||||||| ||||||||||||    
T  35800033 cataacgtaaaaaggcggtcgtcggtaacaaggagaaggcgtccgtcaccggagtacaagagaaccaatggtggagc 35799957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 46699473 - 46699566
Alignment:
Q  155 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaa 249  Q
    ||||||||||| | ||||| |||| |||||| | ||| | ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  46699473 cctcaccaagacacaggcatcaac-caaacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagcggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 4305135 - 4305075
Alignment:
Q  174 gcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccg 236  Q
    |||| |||||||| |||||||   |||||||||||||||||||||||||||| ||||||||||    
T  4305135 gcaagacaaacattaatctagc--aagacgaaatccaacaacaaaacacgggcagcgacgccg 4305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 263
Target Start/End: Complemental strand, 38929227 - 38929125
Alignment:
Q  161 caagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccag 260  Q
    ||||||| ||||| |||| ||||  |||||| | ||||||| || | | |||||||||||||||| || ||||||| | |||||||||| ||||||| ||    
T  38929227 caagaaacaggcaacaacccaaagctaaatcaaaaggaagatgataactaacaacaaaacacgggcagtgacgccggtctgaagcggaaacacaacctag 38929128  T
Q  261 atc 263  Q
    |||    
T  38929127 atc 38929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 7702994 - 7702937
Alignment:
Q  175 caacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgc 234  Q
    |||||||||||| |||||||   ||||||||||||||||||||||||| || ||||||||    
T  7702994 caacacaaacatcaatctagc--aagacgaaatccaacaacaaaacacaggcagcgacgc 7702937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 153 - 369
Target Start/End: Original strand, 16510829 - 16511045
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||| ||||||    
T  16510829 atcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaacaacaaaacacgggcagcgatgccggtttgaagcagaacca 16510928  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaa 352  Q
    ||||||| ||||||||||||| | ||| ||||||||||||| ||  ||| || |||||||||||||||| ||||||||||||||||||||||| | ||||    
T  16510929 caacccatatcataaaaaggcagtcgcttgtgacaaggagaatgtgttcatctccgtagtaaaagagaaacaatggtggagcaaaaacggcggttctgaa 16511028  T
Q  353 caacactacccgcaacc 369  Q
    || |||| |||| ||||    
T  16511029 cagcacttcccggaacc 16511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 12793655 - 12793536
Alignment:
Q  155 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccaca 254  Q
    ||||||||||||| || ||||||||||||  || ||| |||||||||||||||||| || ||||||||||| | |||||||  ||||||||| || ||||    
T  12793655 cctcaccaagaaacagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacaca 12793556  T
Q  255 acccagatcataaaaaggcg 274  Q
    ||||| ||| ||||||||||    
T  12793555 acccatatcgtaaaaaggcg 12793536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 9223443 - 9223377
Alignment:
Q  155 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaaca 221  Q
    ||||||||||||| |||  |||||||||||| ||||  |||||||||||||||||||||||||||||    
T  9223443 cctcaccaagaaacaggaggcaacacaaacacaaattcagaggaagacgaaatccaacaacaaaaca 9223377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 374 - 403
Target Start/End: Original strand, 16511068 - 16511097
Alignment:
Q  374 cacatcaccaccaccacacaacctaaactg 403  Q
    ||||||||||||||||||||||||||||||    
T  16511068 cacatcaccaccaccacacaacctaaactg 16511097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 153 - 347
Target Start/End: Complemental strand, 19176023 - 19175830
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| | ||| || |||||||||||||||| ||| |||| |||||||||||||||||||||| ||||| |||| ||||||| |||||||    
T  19176023 atcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagaggaacca 19175924  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggat 347  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  19175923 caacccatatcataaaaaggcagccgcctgtgacaaggagaatgcattcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaacggcggat 19175830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 153 - 334
Target Start/End: Complemental strand, 20611325 - 20611145
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||||| ||||| ||||||||||||||||||||| | ||||||| || ||||||| | || ||    
T  20611325 atcctcaccaagaaacaggcatcaacacaaatatagatctagatgaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaagca 20611226  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagc 334  Q
    ||||| | |||||| |||||||||||||  |||||||||||| || ||||||  || |||||||||||| ||||||||||||    
T  20611225 caaccaaaatcatagaaaggcggccgccgatgacaaggagag-gcgttcgtcggcggagtaaaagagaaccaatggtggagc 20611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 293
Target Start/End: Original strand, 1653458 - 1653597
Alignment:
Q  154 tcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccac 253  Q
    ||||||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||| ||||||||| ||  ||    
T  1653458 tcctcacgaagaaacaggcagcaacacaaacataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagac 1653557  T
Q  254 aacccagatcataaaaaggcggccgcctgtgacaaggaga 293  Q
    |||||||||| ||| ||||  |||||| ||||||||||||    
T  1653558 aacccagatcgtaacaaggttgccgccagtgacaaggaga 1653597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 17501774 - 17501891
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||| ||| ||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||  |  |||| |  |||||||||||| ||    
T  17501774 atcctcaccaaaaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcggaaaca 17501873  T
Q  253 caacccagatcataaaaa 270  Q
    ||||| ||||| ||||||    
T  17501874 caacctagatcgtaaaaa 17501891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 30935940 - 30936017
Alignment:
Q  156 ctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccg 236  Q
    |||||||||||| || || ||||| ||||||||||||||||   ||||||| |||||||||||||||||  ||||||||||    
T  30935940 ctcaccaagaaacagacaacaacaaaaacataaatctagag---gacgaaacccaacaacaaaacacggacagcgacgccg 30936017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 25595151 - 25595219
Alignment:
Q  155 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacg 223  Q
    ||||||||||||| | ||||||||||||| | |||||||||||| |||||||   ||||||||||||||    
T  25595151 cctcaccaagaaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaacacg 25595219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 153 - 357
Target Start/End: Original strand, 39339372 - 39339574
Alignment:
Q  153 atcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaacca 252  Q
    ||||||||||||||| || |||||||||||| ||| ||||||||||||| ||||||||||||||||||||| | ||||||| || ||||||| | || ||    
T  39339372 atcctcaccaagaaacagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcggtttgaagtgaaaaca 39339471  T
Q  253 caacccagatcataaaaaggcggccgcctgtgacaaggagagtgctttcgtcaccgtagtaaaagagaatcaatggtggagcaaaaacggcggatttgaa 352  Q
    ||||| | |||||| ||||||||||||| ||||||||||||| || ||||||  || |||||||||||| ||||||||||||   |||||||||| ||||    
T  39339472 caaccaaaatcatagaaaggcggccgccggtgacaaggagag-gcgttcgtcggcggagtaaaagagaaccaatggtggagc-gtaacggcggatctgaa 39339569  T
Q  353 caaca 357  Q
    |||||    
T  39339570 caaca 39339574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 31902921 - 31903044
Alignment:
Q  149 aaatatcctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcgga 248  Q
    ||||| ||||| ||||||| |  ||||||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  31902921 aaatagcctcagcaagaaacaaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcgga 31903020  T
Q  249 accacaacccagatcataaaaagg 272  Q
    | ||||||| ||||||||||||||    
T  31903021 aacacaacctagatcataaaaagg 31903044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 2062360 - 2062247
Alignment:
Q  155 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccaca 254  Q
    |||||||||||||  || ||| ||||||||| | ||| |||| |||| | || |||||||||||||||||| |||||||||| | |||||||||| ||||    
T  2062360 cctcaccaagaaactggaagctacacaaacacagatcaagagaaagatgcaacccaacaacaaaacacgggcagcgacgccggtctgaagcggaaacaca 2062261  T
Q  255 acccagatcataaa 268  Q
    ||||||||| ||||    
T  2062260 acccagatcgtaaa 2062247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 22886030 - 22886137
Alignment:
Q  155 cctcaccaagaaagaggcagcaacacaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccaca 254  Q
    ||||||||||||| | |||||||||||   | | ||| ||||||||| |||| |||||||||||||||||  |||||||||  | |||||||||| || |    
T  22886030 cctcaccaagaaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgccagtctgaagcggaaacaaa 22886129  T
Q  255 acccagat 262  Q
    ||||||||    
T  22886130 acccagat 22886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 27739268 - 27739145
Alignment:
Q  155 cctcaccaagaaagaggcagcaacacaaa-cataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccac 253  Q
    ||||| ||||||| | ||||| ||||||| || ||||| ||||||||| |||| | ||||||||||||| || ||||||| ||   |||||||||| |||    
T  27739268 cctcatcaagaaacaagcagccacacaaatcacaaatcaagaggaagatgaaaccaaacaacaaaacacaggcagcgacgtcgccctgaagcggaaacac 27739169  T
Q  254 aacccagatcataaaaaggcggcc 277  Q
    ||| ||||||  ||||||| ||||    
T  27739168 aacgcagatcgaaaaaaggtggcc 27739145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 29486463 - 29486398
Alignment:
Q  193 agaggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaaccc 258  Q
    ||||| |||||||| | |||||||||||  ||| |||||||||| | |||||||||| ||||||||    
T  29486463 agagggagacgaaaccaaacaacaaaacttgggcagcgacgccggtctgaagcggaaacacaaccc 29486398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 25505550 - 25505606
Alignment:
Q  179 acaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgcc 235  Q
    ||||| ||| ||| |||||||||||||  | |||||||||||||||| |||||||||    
T  25505550 acaaaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgacgcc 25505606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 27712478 - 27712380
Alignment:
Q  195 aggaagacgaaatccaacaacaaaacacgggaagcgacgccgatttgaagcggaaccacaacccagatcataaaaaggcggccgcctgtgacaaggaga 293  Q
    ||||||| |||| |||||||||||||||||| | |||||||| | |||||  ||| ||||| | ||||| |||| ||||  || || ||||||||||||    
T  27712478 aggaagatgaaacccaacaacaaaacacgggcaacgacgccggtctgaagtagaaacacaatctagatcgtaaacaggcaaccaccggtgacaaggaga 27712380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 8730357 - 8730301
Alignment:
Q  179 acaaacataaatctagaggaagacgaaatccaacaacaaaacacgggaagcgacgcc 235  Q
    ||||| ||| ||| |||||||||||||  | |||||||||||||||| |||||||||    
T  8730357 acaaaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgacgcc 8730301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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