View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10708_4 (Length: 378)
Name: NF10708_4
Description: NF10708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10708_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 195 - 378
Target Start/End: Original strand, 4366050 - 4366233
Alignment:
| Q |
195 |
caccctatagatgttttagggaagggattctatgttaccttaggctctcttaagaagagattgatgaaatttccaaattgactttgatctctacaattcc |
294 |
Q |
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| T |
4366050 |
caccctatagatgttttaaggaagggattctatgttaccttaggctctcttaagaagagattgatgaaatttccaaattgactttgatctctacaattcc |
4366149 |
T |
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| Q |
295 |
aagcttccattctcgtgacttctcttcatctctaattacttcttctccttctaagttgctgcccacatagggagaattaagggg |
378 |
Q |
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| T |
4366150 |
aagcttccattctcgtgacttctcttcatctctaattacttcttctccttctaagttgctgcccacatagggagaattaagggg |
4366233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 4365943 - 4366051
Alignment:
| Q |
18 |
tcagttataaactaactcatacccatcaaactcaattaaaaacaacatgcaaactaattatcattttgtatgcaataaaaatcagctcacaacaacaaac |
117 |
Q |
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| T |
4365943 |
tcagttataaactaactcatacccatcaaactcaattaaaaacaacatgcaaactaattatcattttgtatgcaacaaaaatcatctcataacaacaaac |
4366042 |
T |
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| Q |
118 |
attcaatca |
126 |
Q |
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| T |
4366043 |
attcaatca |
4366051 |
T |
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