View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10708_5 (Length: 367)
Name: NF10708_5
Description: NF10708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10708_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 352
Target Start/End: Original strand, 34972188 - 34972511
Alignment:
| Q |
30 |
caaacttggttcaagctcaactactgagcttcatcctaaagctggatctcaaggtgaagctaagccaacaaacatgccacctgctagtgttatgacaaga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34972188 |
caaacttggttcaagctcaactactgagcttcatcctaaagctggatctcaaggtgaagctaagccaacaaacatgccacctgctagtgttatgacaaga |
34972287 |
T |
|
| Q |
130 |
ctcattttgattatggtgtggaggaaattgattaggaatcctaatacttattccagccttattggtcttacctggtccctggtctcattcgggtatgcaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34972288 |
ctcattttgattatggtgtggaggaaattgattaggaatcctaatacttattccagccttattggtcttacctggtccctggtctcattcaggtatgcaa |
34972387 |
T |
|
| Q |
230 |
cattcatttatttgaa-nnnnnnnngcattatttttgcaaaattttaatctttcacattgttatgcaggtggaatgttgttatgcctgctattgttgcta |
328 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34972388 |
cattcatttatttgaatttttttttgcattatttttgcaaaattttaatctttcatattgttatgcaggtggaatgttgttatgcctgctattgttgcta |
34972487 |
T |
|
| Q |
329 |
aatcaattgcaattttatctgatg |
352 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
34972488 |
aatcgattgcaattttatctgatg |
34972511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 25040218 - 25040341
Alignment:
| Q |
103 |
atgccacctgctagtgttatgacaagactcattttgattatggtgtggaggaaattgattaggaatcctaatacttattccagccttattggtcttacct |
202 |
Q |
| |
|
|||||||| |||||||| |||||||| || || ||||||||||| ||||| ||| | || || ||||| || |||||||| ||| | |||||||| || | |
|
|
| T |
25040218 |
atgccaccagctagtgtgatgacaaggcttatattgattatggtttggagaaaacttatcagaaatccaaacacttattctagcttaattggtctcactt |
25040317 |
T |
|
| Q |
203 |
ggtccctggtctcattcgggtatg |
226 |
Q |
| |
|
|||| |||| |||||| |||||| |
|
|
| T |
25040318 |
ggtctttggtttcattcaggtatg |
25040341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University