View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10708_6 (Length: 359)
Name: NF10708_6
Description: NF10708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10708_6 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 34899721 - 34899398
Alignment:
| Q |
1 |
cctatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcctaata |
100 |
Q |
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| T |
34899721 |
cctatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcctaata |
34899623 |
T |
|
| Q |
101 |
actaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagann |
200 |
Q |
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| T |
34899622 |
actaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagatt |
34899523 |
T |
|
| Q |
201 |
nnnnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaggttgagtttaagaaggatccaaatagcaccacaagaaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899522 |
ttttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaa |
34899423 |
T |
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| Q |
301 |
ttagaggagtgtcaaaacaaaaggg |
325 |
Q |
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|||||| |||||||||||||||||| |
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| T |
34899422 |
ttagagaagtgtcaaaacaaaaggg |
34899398 |
T |
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