View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10708_8 (Length: 341)
Name: NF10708_8
Description: NF10708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10708_8 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 72 - 312
Target Start/End: Original strand, 6969097 - 6969337
Alignment:
| Q |
72 |
gttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaatattgctagttattttatattagagtcttattaaaacattactatgaa |
171 |
Q |
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| T |
6969097 |
gttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaatattgctagttattttatattagagtcttattaaaacattagtatgaa |
6969196 |
T |
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| Q |
172 |
tctctatttctatgcttacattagagtcttaatttactttattataagttagattaatatgctaaggttgaaacattgttggtgattatgctgaattaca |
271 |
Q |
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| T |
6969197 |
tctctatttctatgcttacattcgagtcttaatttactttattataagttagattaatatgctaaggttgaaacattgttggtgattatgctgaattaca |
6969296 |
T |
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| Q |
272 |
aactaaacaatgtacttcaggccttataacaaagtaggttg |
312 |
Q |
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| T |
6969297 |
aactaaacaatgtacttcaggccttataacaaagtaggttg |
6969337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 1000088 - 999959
Alignment:
| Q |
114 |
tcctaggcaatattgctagttattttatatt--agagtcttattaaaa------cattactatgaatctctatttctatgcttacattagagtcttaatt |
205 |
Q |
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| T |
1000088 |
tcctaggcaatattgctggttattttatattttagggtcttattaaaattaaaacattagtat-agtatctatttctatgcttacattagtgtcttgatt |
999990 |
T |
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| Q |
206 |
tactttattataagttagattaatatgctaa |
236 |
Q |
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| T |
999989 |
tacattaatataagttagattaatgtgctaa |
999959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 2178425 - 2178513
Alignment:
| Q |
142 |
attagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttagattaatat |
231 |
Q |
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| T |
2178425 |
attagagtcgtattaaaacattagtatgaatatctatttccatgcttacattacattcttattttagattattat-agttagattaatat |
2178513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 51315915 - 51315840
Alignment:
| Q |
133 |
ttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttac |
208 |
Q |
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| T |
51315915 |
ttattttgcattagagtcttatgaaaacgttaatatgaatatctatttccatgtttacaatagagtcttattttac |
51315840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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