View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10708_low_1 (Length: 253)
Name: NF10708_low_1
Description: NF10708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10708_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 32627146 - 32626906
Alignment:
| Q |
1 |
tgcaatgtatactgtagggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttat |
100 |
Q |
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| T |
32627146 |
tgcaatgtatactgtagggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttat |
32627047 |
T |
|
| Q |
101 |
tactgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtgatgattttgaatctgaatcattcggagatgatggatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627046 |
tactgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtgatgattttgaatctgaatcattcggagatgatggatac |
32626947 |
T |
|
| Q |
201 |
tatgtggcacaatgcatgagagctttggctgaacctttgct |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
32626946 |
aatgtggcacaatgcatgagagctttggctgaacctttgct |
32626906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 32708811 - 32708710
Alignment:
| Q |
15 |
tagggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcat |
114 |
Q |
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||||||| ||||||||||||| | || ||||||||||||| ||| ||| |||||||||||| |||||||||||||||||| | | |||||||||| |
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| T |
32708811 |
tagggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcat |
32708712 |
T |
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| Q |
115 |
tt |
116 |
Q |
| |
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|| |
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| T |
32708711 |
tt |
32708710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 32702737 - 32702691
Alignment:
| Q |
193 |
atggatactatgtggcacaatgcatgagagctttggctgaacctttg |
239 |
Q |
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| T |
32702737 |
atggatacgatgtggcacaatgcataagggctgtggctgaacctttg |
32702691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 27736172 - 27736008
Alignment:
| Q |
4 |
aatgtatactgtagggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattac |
103 |
Q |
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||||||| ||| |||||||||| || ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| | | |
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| T |
27736172 |
aatgtatgctgcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaa |
27736073 |
T |
|
| Q |
104 |
tgaaggatcatttgtcatgaatcaactcgagatatctgaagtgaattggaatgctcgtgatgatt |
168 |
Q |
| |
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| T |
27736072 |
tgaaggatcatttgtcatcaataaattggaggtttctgaagttaattggaatgctcttgatgatt |
27736008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 27735965 - 27735911
Alignment:
| Q |
187 |
gagatgatggatactatgtggcacaatgcatgagagctttggctgaacctttgct |
241 |
Q |
| |
|
|||||||||||||| || ||||||||||||| || ||| |||||||||||||||| |
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|
| T |
27735965 |
gagatgatggatacaatatggcacaatgcattagggctgtggctgaacctttgct |
27735911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 21941966 - 21941865
Alignment:
| Q |
16 |
agggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcatt |
115 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||| |||||||| | ||||||| |||||| |
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| T |
21941966 |
agggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatcatt |
21941867 |
T |
|
| Q |
116 |
tg |
117 |
Q |
| |
|
|| |
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|
| T |
21941866 |
tg |
21941865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 20117884 - 20117989
Alignment:
| Q |
16 |
agggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcatt |
115 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||| | |||||||| ||||| |
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| T |
20117884 |
agggaatcatagaagaagagaccctcaatactttcaatctccctaactattatccatctccaactgaagtgaaattggaagttctaactgaagggtcatt |
20117983 |
T |
|
| Q |
116 |
tgtcat |
121 |
Q |
| |
|
|||||| |
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|
| T |
20117984 |
tgtcat |
20117989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 5810812 - 5810728
Alignment:
| Q |
31 |
aagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcatt |
115 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||||||||||||||||||| || | ||||||||| | || ||||||||||| |
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| T |
5810812 |
aagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaaggatcatt |
5810728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 5810662 - 5810611
Alignment:
| Q |
190 |
atgatggatactatgtggcacaatgcatgagagctttggctgaacctttgct |
241 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||| |||||||||||||||| |
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|
| T |
5810662 |
atgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgct |
5810611 |
T |
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