View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10709_low_3 (Length: 227)
Name: NF10709_low_3
Description: NF10709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10709_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 12699550 - 12699745
Alignment:
| Q |
14 |
atgaacaacacaatcaattacctgagcaactgtgttatgatatttcttgccaaagcttaaggttactctgtttccgaaggcttcaaagagtggaagcaaa |
113 |
Q |
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| T |
12699550 |
atgaacaacacaatcaattacctgagcaactgtgttatgatatttcttgccaaagcttaaggttactgtgtttccaaaggcttcaaagagtggaagcaag |
12699649 |
T |
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| Q |
114 |
gctttgggaattttcgctctatagctcatgtaaaagatgaaacactactagaaaatttacatttgacatcagggcattcacatcagtggagaaata |
209 |
Q |
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| T |
12699650 |
gctttgggaattttcgctctatagctcatgtaaaagatgaaacactactagaaaatttacatttgacatcagggctttcacatcagtggagaaata |
12699745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31713445 - 31713489
Alignment:
| Q |
156 |
cactactagaaaatttacatttgacatcagggcattcacatcagt |
200 |
Q |
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| T |
31713445 |
cactactagaaaatatacatttgacatcagggttttcacatcagt |
31713489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 24167159 - 24167212
Alignment:
| Q |
156 |
cactactagaaaatttacatttgacatcagggcattcacatcagtggagaaata |
209 |
Q |
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|||||||||||||| ||||||| ||| |||| |||||||||||||||||||| |
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| T |
24167159 |
cactactagaaaatatacatttaacaatagggatttcacatcagtggagaaata |
24167212 |
T |
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