View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1070_low_2 (Length: 400)
Name: NF1070_low_2
Description: NF1070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1070_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 30 - 389
Target Start/End: Complemental strand, 45887562 - 45887203
Alignment:
| Q |
30 |
caaaggaacggaaagaaagtggaaaacaaagagaagaagtttgaggatggtaatggtaaaggcaagccttcagttcaaggtggtggcaaggtgagaaaaa |
129 |
Q |
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| T |
45887562 |
caaaggaacggaaagaaagtggaaaacaaagagaagaagtttgaggatggtaatggtaaaggcaagccttcagttcaaggtggtggcaaggtgagaaaaa |
45887463 |
T |
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| Q |
130 |
ggaaataggcttgatttttcgcatgaattgaacttagcatcttgagatttacaatgctaacgcactatgcatcaatcacttgcgttagattccggtgata |
229 |
Q |
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| T |
45887462 |
ggaaataggcttgatttttcgcatgaattgaacttagcatcttgagatttacaatgctaacgcactacgcatcaaccacctgcgctagattccggtgata |
45887363 |
T |
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| Q |
230 |
tgtattttctgattaacagatagtttattagtatgtttttagcttcattttaactaaataatagctttaattccagtgttgtactgttttgtgttttcgg |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45887362 |
tgtattttctgattaacagatagtttattagtatgtttttagcttcattttaactaaataatagctttaattccagtgttgtactgttttgtgtttttgg |
45887263 |
T |
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| Q |
330 |
atttgttgttatgatgttgttgaaatttgaatcaagaaaatgtcatggccatatagtatt |
389 |
Q |
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| T |
45887262 |
atttgttgttatgatgttgttgaaatttgaatcaagaaaatgtcatggccatatagtatt |
45887203 |
T |
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