View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1070_low_3 (Length: 371)

Name: NF1070_low_3
Description: NF1070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1070_low_3
NF1070_low_3
[»] chr8 (4 HSPs)
chr8 (1-363)||(42080217-42080579)
chr8 (49-196)||(20526245-20526393)
chr8 (53-95)||(23558673-23558715)
chr8 (2-116)||(37590063-37590177)
[»] scaffold0019 (1 HSPs)
scaffold0019 (2-244)||(73364-73607)
[»] chr5 (9 HSPs)
chr5 (17-364)||(13948830-13949178)
chr5 (12-361)||(40299656-40300006)
chr5 (99-361)||(27393101-27393364)
chr5 (148-363)||(3051098-3051317)
chr5 (18-112)||(3050999-3051093)
chr5 (49-134)||(26683459-26683544)
chr5 (21-117)||(2157822-2157918)
chr5 (17-117)||(19237665-19237765)
chr5 (60-128)||(29755037-29755105)
[»] chr6 (2 HSPs)
chr6 (45-361)||(17392060-17392374)
chr6 (55-117)||(16416600-16416662)
[»] chr1 (7 HSPs)
chr1 (17-185)||(34696144-34696313)
chr1 (49-116)||(2002610-2002677)
chr1 (57-107)||(30981235-30981285)
chr1 (21-117)||(4614889-4614985)
chr1 (46-117)||(41117188-41117259)
chr1 (19-109)||(24065220-24065310)
chr1 (21-117)||(13288086-13288182)
[»] scaffold0013 (2 HSPs)
scaffold0013 (142-363)||(43870-44091)
scaffold0013 (45-119)||(42499-42573)
[»] chr2 (6 HSPs)
chr2 (273-363)||(14995107-14995197)
chr2 (64-117)||(14995196-14995249)
chr2 (64-182)||(10973636-10973755)
chr2 (2-117)||(11818469-11818584)
chr2 (98-238)||(2973541-2973682)
chr2 (55-116)||(11502322-11502383)
[»] chr7 (4 HSPs)
chr7 (21-117)||(48100785-48100881)
chr7 (25-117)||(15633228-15633320)
chr7 (47-116)||(26016528-26016597)
chr7 (47-116)||(32480215-32480284)
[»] scaffold1964 (1 HSPs)
scaffold1964 (58-238)||(989-1170)
[»] chr3 (6 HSPs)
chr3 (21-117)||(18357106-18357203)
chr3 (55-116)||(53437536-53437597)
chr3 (2-125)||(45680130-45680253)
chr3 (40-117)||(49499409-49499486)
chr3 (55-116)||(53394835-53394896)
chr3 (21-117)||(16739475-16739571)
[»] chr4 (4 HSPs)
chr4 (211-268)||(49746142-49746199)
chr4 (21-117)||(37061094-37061190)
chr4 (63-229)||(12355110-12355277)
chr4 (23-116)||(18878174-18878267)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 42080579 - 42080217
Alignment:
Q  1 ccaatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42080579 ccaatataatttggtgtatgaaaataaacaacgggattggctacaaatgtggtctctcctgcaagagtatgagcaatcacatttgcttgtctcctagcaa 42080480  T
Q  101 actccacccgagagttgttgaacttggaagagagaagaaccgggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||    
T  42080479 actccacccgagagttgttgaacttggaagagagaagaaccgggaagccattataatattacctaattcagagatgtcttccctacctgagtaaatgcca 42080380  T
Q  201 actttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080379 actttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatat 42080280  T
Q  301 caacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatctc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080279 caacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatctc 42080217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 20526245 - 20526393
Alignment:
Q  49 gtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag-aagaaccgggaag 147  Q
    |||| ||| ||||| ||||||||||| | |||||| ||||||| || | |||||||||||||||||||| | || ||| | ||||| || ||||||||||    
T  20526245 gtggcctcccctgcgagagtatgagccaccacattaacttgtcgccgaacaaactccacccgagagttggtaaatttgaacgagagcaaaaaccgggaag 20526344  T
Q  148 ccgtgataatattacctaattcagagatgtcttccctacctcagtaaat 196  Q
    |  ||||||| ||||| | |||||  |||||||||| |||  |||||||    
T  20526345 caatgataatgttaccgacttcagttatgtcttcccgacccgagtaaat 20526393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 23558715 - 23558673
Alignment:
Q  53 tctctcctgcaagagtatgagcaatcacatttacttgtctcct 95  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  23558715 tctctcctgcaagagtatgaacaaccacatttgcttgtctcct 23558673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 37590063 - 37590177
Alignment:
Q  2 caatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaa 101  Q
    ||||| |||| ||| ||| |||||||||  ||||| | |||| | |||||| ||| | |||||||| |||||||| ||| ||  |||||| |||| ||||    
T  37590063 caatacaattgggtatattaaaataaacggcggaactagctaaagacgtggcctcccttgcaagagcatgagcaaccacgttggcttgtcgcctaacaaa 37590162  T
Q  102 ctccacccgagagtt 116  Q
    |||||||| ||||||    
T  37590163 ctccaccctagagtt 37590177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 2 - 244
Target Start/End: Original strand, 73364 - 73607
Alignment:
Q  2 caatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaa 101  Q
    ||||| |||| ||| ||| ||| |||||||||| | | |||| |||||||||||||||||| || |||| ||||| ||||||| |||||||| |||||||    
T  73364 caatacaattgggtatataaaagtaaacaacgggactagctagaaacgtggtctctcctgcgagtgtatcagcaaccacatttgcttgtctcttagcaaa 73463  T
Q  102 ctccacccgagagttgttgaacttggaagagagaagaa-ccgggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgcca 200  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||  ||||||| ||    
T  73464 ctccacccgagagttgttgaacttggaagagagaagaacccgagaagccgtgataatatttcctaattcagagatgtcttcccttcctgggtaaatggca 73563  T
Q  201 actttcgtggttttggaatcaacttcaaagtcgatattgtcgag 244  Q
     |||||||||||||||||||||||||||||| ||||||||||||    
T  73564 tctttcgtggttttggaatcaacttcaaagttgatattgtcgag 73607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 13948830 - 13949178
Alignment:
Q  17 tatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    |||||||||||||||||||| | |||| |||||||  ||||| ||| |||||||||| ||  |||||| ||||||||||| |||||| || || | ||||    
T  13948830 tatgaaaataaacaacggaactagctagaaacgtgacctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaacttcatccaatagtt 13948929  T
Q  117 gttgaacttggaagagagaagaaccgg-gaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttg 215  Q
     ||||||||||||||||||||||   | ||||| || |||| ||||||||||||| |||||| |||||||| | |||||| | ||  |||  ||||||||    
T  13948930 attgaacttggaagagagaagaatttgagaagcagt-ataacattacctaattcaaagatgttttccctac-tgagtaaacgacatattttatggttttg 13949027  T
Q  216 gaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacac 315  Q
    |||||||||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||||||||||| |||||||||||||||  |||||| ||    
T  13949028 gaatcaacttcaaagtcgatattgtcgagttgcatgtcacacacccattgcaaggcttgatagagacccaaagtctcgccaatatcaaccgagtaaaaac 13949127  T
Q  316 caacaaagctgattgttttggccagtacaaa--cacaccaccttcatctca 364  Q
    |||||||| |||||||| |||||||| ||||  || |||||||||||||||    
T  13949128 caacaaagttgattgttctggccagtgcaaacgcataccaccttcatctca 13949178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 40300006 - 40299656
Alignment:
Q  12 tggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccga 111  Q
    |||| |||||||||||||||||||| | || | ||| |||| |||| || | ||||||||||||| ||| ||| |||||| |||| ||||||||||||||    
T  40300006 tggtatatgaaaataaacaacggaactagcgagaaatgtggcctcttctacgagagtatgagcaaccacgtttgcttgtcgcctaacaaactccacccga 40299907  T
Q  112 gagttgttgaacttggaagagagaagaaccg-ggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtgg 210  Q
    ||||||||||||||||| || || | |||   |||||  ||| | ||||| ||||||||| | ||||||||| |  || |||||||  || || | |||     
T  40299906 gagttgttgaacttggaggaaagcataacttcggaagttgtggtgatattgcctaattcataaatgtcttccttgtctgagtaaatcgcatctcttgtgc 40299807  T
Q  211 ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagta 310  Q
    |||||||||||| ||||||  | |||||||||||||||||||| || ||||||||| ||||||||||||||||||| || |||||||||||||   ||||    
T  40299806 ttttggaatcaatttcaaaaccaatattgtcgagttgcatgtcactcacccattgctaggcgtgatagagacccaaggcttcgccaatatcaattgagta 40299707  T
Q  311 aacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatc 361  Q
    | |  |||||||| ||||| |||||||||| ||||||||||||||||||||    
T  40299706 agcgacaacaaagttgattattttggccagaacaaacacaccaccttcatc 40299656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 99 - 361
Target Start/End: Original strand, 27393101 - 27393364
Alignment:
Q  99 aaactccacccgagagttgttgaacttggaagagagaagaac-cgggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatg 197  Q
    |||||||||||||||||||||||||||| | || || | ||| |  ||||| ||||| ||||| ||||||||||| ||||||||||| |||  ||||||     
T  27393101 aaactccacccgagagttgttgaacttgaaggaaagtaaaactcaagaagctgtgatgatattgcctaattcagaaatgtcttccctgcctgcgtaaatt 27393200  T
Q  198 ccaact-ttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgcca 296  Q
     || || || ||| ||||| ||||||||||||| |||||||||||  || |||||||  | |||||||||||| |||||||||||||||| || ||||||    
T  27393201 acatctctttgtgcttttgaaatcaacttcaaaatcgatattgtctggt-gcatgtcaatcacccattgcaagacgtgatagagacccaaggcttcgcca 27393299  T
Q  297 atatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatc 361  Q
    ||||||||   ||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  27393300 atatcaaccgggtaaacaccaacaaagctgattgttttggccaaaacaaacacaccaccttcatc 27393364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 148 - 363
Target Start/End: Original strand, 3051098 - 3051317
Alignment:
Q  148 ccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttg 247  Q
    ||||||||||| ||||||| ||||| |||| ||| |||||| ||||||||    ||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  3051098 ccgtgataatagtacctaaatcagatatgttttctctacctgagtaaatggtctctttcgtggttttggaatcaatttcaaagtcgatattatcgggttg 3051197  T
Q  248 catgtcgctaacccattgcaaggcgtgata----gagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtac 343  Q
    |||||| ||  |||||| ||||||||||||    |||||||||||||||| |||||||||   ||||||||||||||||| ||||||||||||| || ||    
T  3051198 catgtcactcgcccattacaaggcgtgatagatagagacccaaagcctcgtcaatatcaatcgagtaaacaccaacaaagttgattgttttggctagaac 3051297  T
Q  344 aaacacaccaccttcatctc 363  Q
    |||| |||| ||||||||||    
T  3051298 aaacccaccgccttcatctc 3051317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 3050999 - 3051093
Alignment:
Q  18 atgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgag 112  Q
    |||||||||||| |||| ||| ||||  ||| || |||||||| | ||||||||||||| |||||||  ||||||||||||||| ||||||||||    
T  3050999 atgaaaataaacgacgggattagctaggaacatgatctctcctacgagagtatgagcaaccacatttgtttgtctcctagcaaaatccacccgag 3051093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 26683544 - 26683459
Alignment:
Q  49 gtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag 134  Q
    |||| ||| ||||||||||||||||| | |||||| ||||||| |  | ||||||||||||||||||||   |||||||| |||||    
T  26683544 gtggcctcccctgcaagagtatgagccaccacattaacttgtcgcggaacaaactccacccgagagttggaaaacttggacgagag 26683459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 2157822 - 2157918
Alignment:
Q  21 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||||||||| | | ||||  |||||||  |||| |||||||| || ||||||| | ||  |||||| |||| ||||||||||||||||||||    
T  2157822 aaaataaacaacgggactagctagtaacgtggcttctcttgcaagagcataagcaatctcgttggcttgtcgcctaacaaactccacccgagagttg 2157918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 19237765 - 19237665
Alignment:
Q  17 tatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    ||||||||||||||  |||||| ||||  | ||||  ||||| |||||||  |||||||| | ||||| |||||| ||||  ||||||||||| ||||||    
T  19237765 tatgaaaataaacagtggaattagctagtagcgtgacctctcttgcaagaacatgagcaacctcatttgcttgtcgcctaataaactccaccctagagtt 19237666  T
Q  117 g 117  Q
    |    
T  19237665 g 19237665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 29755037 - 29755105
Alignment:
Q  60 tgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttgga 128  Q
    ||||||||| ||||| | ||||||  |||||| |||| |||||||||||| ||||||| | ||||||||    
T  29755037 tgcaagagtgtgagccaccacattagcttgtcgcctaacaaactccaccctagagttggtaaacttgga 29755105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 45 - 361
Target Start/End: Original strand, 17392060 - 17392374
Alignment:
Q  45 aaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagagaagaac-cgg 143  Q
    |||||| | ||||||||| ||| ||||||||| ||||||| ||| |||||||| ||||| ||||||| ||||||||||| ||||||||||||||   |||    
T  17392060 aaacgtagcctctcctgcgagactatgagcaaccacatttgcttatctcctagaaaacttcacccgatagttgttgaacctggaagagagaagatttcgg 17392159  T
Q  144 gaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaacttt-cgtggttttggaatcaacttcaaagtcgatattgtcg 242  Q
    ||||  |||||     |||||||||||||||| |||||||||||| |||||| | |  |||| || | ||||||||||||||||||||||||||||||||    
T  17392160 gaagttgtgatg----tacctaattcagagatttcttccctacctgagtaaacgacctcttttcgggtttttggaatcaacttcaaagtcgatattgtcg 17392255  T
Q  243 agttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagta 342  Q
    ||||||||||| || | |||||||||||||||||||||||||||||| || |||||||||||  | |||||||||| ||||||||||||||||||||| |    
T  17392256 agttgcatgtcactcaaccattgcaaggcgtgatagagacccaaagcttcaccaatatcaaccgattaaacaccaataaagctgattgttttggccagaa 17392355  T
Q  343 caaacacaccaccttcatc 361  Q
     |||||| |||||||||||    
T  17392356 gaaacacgccaccttcatc 17392374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 16416662 - 16416600
Alignment:
Q  55 tctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||||||| || |||||| | |||||||||||| |||| |||||| ||||| |||||||    
T  16416662 tctcctgcaagaatacgagcaacctcatttacttgtcgcctaacaaactacaccctagagttg 16416600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 34696144 - 34696313
Alignment:
Q  17 tatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    |||||||||||||||||  | | |||| |||||||||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  34696144 tatgaaaataaacaacgagactagctagaaacgtggtctctccttcgagagtatgagcaaccacattttcttgtctcctagcaaactccacccgagagtt 34696243  T
Q  117 gttgaacttggaagagagaagaa-ccgggaagccgtgataatattacctaattcagagatgtcttcccta 185  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||||    
T  34696244 gttgaacttggaagagagaagaatccgggaagccgtgataatattacataataaagagatgtcttcccta 34696313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 2002610 - 2002677
Alignment:
Q  49 gtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    |||||||||| ||| ||||||||||||| ||||||| ||||||||||  |||||||||||||||||||    
T  2002610 gtggtctctcatgcgagagtatgagcaaccacatttgcttgtctcctgacaaactccacccgagagtt 2002677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 30981285 - 30981235
Alignment:
Q  57 tcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccac 107  Q
    |||||| ||||||||||||| |||||||| |||||||||| ||||||||||    
T  30981285 tcctgcgagagtatgagcaaccacatttatttgtctcctaacaaactccac 30981235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 4614985 - 4614889
Alignment:
Q  21 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    ||||| |||||||||| | | || ||||||||  ||| |||||||   |||||||| |||||||  ||||| ||||||||||||||||| |||||||    
T  4614985 aaaatcaacaacggaactagttagaaacgtggcttcttctgcaagcacatgagcaaccacatttgtttgtcgcctagcaaactccaccctagagttg 4614889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 41117259 - 41117188
Alignment:
Q  46 aacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||  |||| |||||||| |||||||| | ||||  |||||| |||| ||||||||||||||||||||    
T  41117259 aacgtggcttctcttgcaagagcatgagcaacctcattggcttgtcgcctaacaaactccacccgagagttg 41117188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 24065310 - 24065220
Alignment:
Q  19 tgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccaccc 109  Q
    |||||||||||||||| | | ||||  |||||||  ||||||||||||  |||||||| | | ||| |||||| |||| ||||||||||||    
T  24065310 tgaaaataaacaacgggactagctagtaacgtggcttctcctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaactccaccc 24065220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 13288182 - 13288086
Alignment:
Q  21 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||||||||| | | |||| |||  |||  |||||||||||   |||||||| | |||||  ||||| ||||||||||||||||| |||||||    
T  13288182 aaaataaacaacgggactagctagaaatatggcttctcctgcaagcacatgagcaaccgcatttgtttgtcgcctagcaaactccaccctagagttg 13288086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 142 - 363
Target Start/End: Complemental strand, 44091 - 43870
Alignment:
Q  142 gggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtc 241  Q
    ||||||| ||||| ||| | |||||| |||| | ||||||||||| | |||||||  || || | ||| ||||| ||||||||||||| |||||||||||    
T  44091 gggaagctgtgatgataatgcctaatacagaaaagtcttccctacatgagtaaatcacatctcttgtgtttttgcaatcaacttcaaaatcgatattgtc 43992  T
Q  242 gagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagt 341  Q
    |||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||| | ||| |||||||  |||||| ||||||||||| |      
T  43991 gagttgcatgtcactcatccattgcaaggcgtgatagagacccaaagcttcgccaatatcaatggagttaacaccataaaagcttattgttttggctaaa 43892  T
Q  342 acaaacacaccaccttcatctc 363  Q
    ||||||||||||| ||| ||||    
T  43891 acaaacacaccactttcgtctc 43870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 42499 - 42573
Alignment:
Q  45 aaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgtt 119  Q
    |||||||| ||||||| | ||||||||| ||| ||| |||  ||||| |||||||||||||||||||||||||||    
T  42499 aaacgtggcctctcctacgagagtatgaacaaccacgtttgtttgtcgcctagcaaactccacccgagagttgtt 42573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 363
Target Start/End: Complemental strand, 14995197 - 14995107
Alignment:
Q  273 tgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatctc 363  Q
    |||||||| |||||||| || ||||||||||   | ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  14995197 tgatagaggcccaaagcttcaccaatatcaattgaataaacaccaacaaagatgattgttttgaccagtacaaacacaccaccctcatctc 14995107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 14995249 - 14995196
Alignment:
Q  64 agagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14995249 agagtatgagcaatcacatttccttgtctcctagcaaactccacccgagagttg 14995196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 10973636 - 10973755
Alignment:
Q  64 agagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag-aagaaccgggaagccgtgataatattac 162  Q
    ||||| ||||| | ||||||  |||||| || | |||||||||||||||||||| | |||||||| ||||| ||  |||||||||||||||| || ||||    
T  10973636 agagtgtgagccaccacattagcttgtcgccgaacaaactccacccgagagttggtaaacttggacgagagcaaagaccgggaagccgtgatgatgttac 10973735  T
Q  163 ctaattcagagatgtcttcc 182  Q
    | ||||| |  |||||||||    
T  10973736 caaattctgttatgtcttcc 10973755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 11818469 - 11818584
Alignment:
Q  2 caatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaa 101  Q
    |||||||||| ||| | |||||||||| ||||| | | ||||  |||||||  ||||||||||||  |||||||| | | ||| |||||| |||| ||||    
T  11818469 caatataattgggtatctgaaaataaataacgggactagctagtaacgtggcttctcctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaa 11818568  T
Q  102 ctccacccgagagttg 117  Q
    |||||||| |||||||    
T  11818569 ctccaccctagagttg 11818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 2973541 - 2973682
Alignment:
Q  98 caaactccacccgagagttgttgaacttggaagagag-aagaaccgggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaat 196  Q
    |||||||||||||||||||| | |||||||| ||||| ||  ||  |||||||||||| || || || |||||||  |||||||||| |||  ||||||     
T  2973541 caaactccacccgagagttggtaaacttggacgagagcaaagactaggaagccgtgatgatgttgccaaattcagttatgtcttcccgacccgagtaaag 2973640  T
Q  197 gccaactttcgtggttttggaatcaacttcaaagtcgatatt 238  Q
      || |||| ||||||||||| || |||||||| || |||||    
T  2973641 agcatcttttgtggttttggagtcgacttcaaaatcaatatt 2973682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 11502383 - 11502322
Alignment:
Q  55 tctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    |||| ||||||||||||||||| ||| ||  |||||| |||| |||||||||||| ||||||    
T  11502383 tctcttgcaagagtatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagtt 11502322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 48100785 - 48100881
Alignment:
Q  21 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||||||||| | |  ||| ||||||||  |||||||||||   |||||||| ||||||| |||||| ||||||||||||||||| |||||||    
T  48100785 aaaataaacaacgggactaactagaaacgtggattctcctgcaagcacatgagcaaccacatttgcttgtcgcctagcaaactccaccctagagttg 48100881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 15633320 - 15633228
Alignment:
Q  25 taaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||||| | | ||||  |||||||  |||| ||||||||||||||||| | ||||  |||||| |||| ||||||||||||||||||||    
T  15633320 taaacaacgggactagctagtaacgtggcttctcttgcaagagtatgagcaacctcattggcttgtcgcctaacaaactccacccgagagttg 15633228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 26016597 - 26016528
Alignment:
Q  47 acgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    |||||||||||| || ||| | ||||| || | |||| |||||||||||| |||||||||||| ||||||    
T  26016597 acgtggtctctcttgtaagtgcatgagtaaccgcattgacttgtctcctaacaaactccaccctagagtt 26016528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 32480284 - 32480215
Alignment:
Q  47 acgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    |||||| ||| | ||||||||||||||||| ||| ||  |||||| |||| |||||||||||| ||||||    
T  32480284 acgtggcctcccttgcaagagtatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagtt 32480215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 1170 - 989
Alignment:
Q  58 cctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag-aagaaccgggaagccgtgataa 156  Q
    ||||| ||||| ||||| | ||||||  |||||| || | |||||||||||||||||||| | |||||||| ||||| ||  || || ||||||||||||    
T  1170 cctgcgagagtgtgagccaccacattagcttgtcgccgaacaaactccacccgagagttggtaaacttggacgagagcaaagactggaaagccgtgataa 1071  T
Q  157 tattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatatt 238  Q
    | || || |||||||  |||||||||| |||  ||||||   |  |||| ||||||||||| || |||||||| || |||||    
T  1070 tgttgccaaattcagttatgtcttcccgacccgagtaaagagcgtcttttgtggttttggagtcgacttcaaaatcaatatt 989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 18357203 - 18357106
Alignment:
Q  21 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacattt-acttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||||||||||||| ||||  |||||||  ||||||||||||| |||||||||| | |||  ||| || |||| |||||||||||| |||||||    
T  18357203 aaaataaacaacggaattagctagtaacgtggcttctcctgcaagagcatgagcaatcccgtttggcttatcacctaacaaactccaccctagagttg 18357106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 53437597 - 53437536
Alignment:
Q  55 tctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    |||| |||||||| |||||||||| |||| |||||||||||| |||||||||||| ||||||    
T  53437597 tctcttgcaagagcatgagcaatcgcattgacttgtctcctaacaaactccaccctagagtt 53437536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 45680130 - 45680253
Alignment:
Q  2 caatataatttggtgtatgaaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaa 101  Q
    ||||| |||| ||| || |||||||||||| || | | || | ||| |||| ||||| |||||||||||||||||||||||||  |  ||||||||||||    
T  45680130 caatacaattgggtatacgaaaataaacaaagggactagcaaaaaatgtggcctctcttgcaagagtatgagcaatcacatttgttattctcctagcaaa 45680229  T
Q  102 ctccacccgagagttgttgaactt 125  Q
    || ||| ||| | ||| |||||||    
T  45680230 cttcactcgaaatttgatgaactt 45680253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 49499486 - 49499409
Alignment:
Q  40 gctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||| ||||||||  |||| |||||||  |||||||  ||||||| |||||| ||||||||||||||||| |||||||    
T  49499486 gctagaaacgtggcttctcttgcaagaacatgagcagccacatttgcttgtcgcctagcaaactccaccctagagttg 49499409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 53394896 - 53394835
Alignment:
Q  55 tctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    |||| |||||||| |||||||| | |||| ||||||||||||  ||||||||||| ||||||    
T  53394896 tctcttgcaagagcatgagcaaccgcattcacttgtctcctaaaaaactccaccctagagtt 53394835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 16739475 - 16739571
Alignment:
Q  21 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||||||||| | | ||||  |||||||  |||| |||||||| || ||||||| | ||   ||||| |||| ||||||||||||||||||||    
T  16739475 aaaataaacaacgggactagctagtaacgtggcttctcttgcaagagcattagcaatctcgttggtttgtcgcctaacaaactccacccgagagttg 16739571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 49746142 - 49746199
Alignment:
Q  211 ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaa 268  Q
    |||| |||||||||||||| ||||||||||| |||||||  || ||||||||||||||    
T  49746142 tttttgaatcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaa 49746199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 37061094 - 37061190
Alignment:
Q  21 aaaataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttg 117  Q
    |||||||||||||| | | |||| |||| |||  |||| ||||||   |||||||| |||||||  ||||| ||||||||||||||||| |||||||    
T  37061094 aaaataaacaacgggactagctagaaacatggcttctcttgcaagcacatgagcaaccacatttgtttgtcacctagcaaactccaccctagagttg 37061190  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 12355277 - 12355110
Alignment:
Q  63 aagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagttgttgaacttggaagagag-aagaaccgggaagccgtgataatatta 161  Q
    |||||| ||||| | ||||||  |||||| |||| |||||||||||| ||||||| | ||||||||  | || ||| |||||||||| ||||| |||||     
T  12355277 aagagtgtgagccaccacattaccttgtcgcctaacaaactccaccctagagttggtaaacttggacaaaagcaaggaccgggaagctgtgatgatattt 12355178  T
Q  162 cctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaa 229  Q
    || ||||| |  |||||||||| |||  | ||||  ||| |||| |||||||| || || ||||||||    
T  12355177 ccaaattccgttatgtcttcccgacccgaataaagaccatcttttgtggttttagagtcgacttcaaa 12355110  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 18878267 - 18878174
Alignment:
Q  23 aataaacaacggaattggctacaaacgtggtctctcctgcaagagtatgagcaatcacatttacttgtctcctagcaaactccacccgagagtt 116  Q
    ||||||| |||  ||| |||| |||||||| ||||| ||||| || ||||||||   |||| ||||||| |||| |||||||||||| ||||||    
T  18878267 aataaacgacgagattagctaaaaacgtggcctctcgtgcaaaagcatgagcaactgcattgacttgtcgcctaacaaactccaccctagagtt 18878174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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