View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1070_low_4 (Length: 308)
Name: NF1070_low_4
Description: NF1070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1070_low_4 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 7739754 - 7740032
Alignment:
| Q |
30 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
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| T |
7739754 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatca |
7739853 |
T |
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| Q |
130 |
tcagcatttgatgtggagaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggagn |
229 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7739854 |
tcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacttgtttggagtagtcttcatcttaattttggagt |
7739953 |
T |
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| Q |
230 |
nnnnnnnctaagttnnnnnnntatgaagaggtggtttgagatttgggtgataagtatgattttaagctttgctatttat |
308 |
Q |
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| T |
7739954 |
tttttttctaagttaaaaaaatatgaagaggtggtttgagatttgggtgataagtatgattttaagctttgctatttat |
7740032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 7731596 - 7731791
Alignment:
| Q |
30 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatca |
129 |
Q |
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| T |
7731596 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatca |
7731695 |
T |
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| Q |
130 |
tcagcatttgatgtggagaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttg |
225 |
Q |
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| T |
7731696 |
tcagcatttgatgtggagaagtagatggaagaaaggaagaggagtgtcaagtggagtaggagaaacatgtttggagtagtcttcatcttaattttg |
7731791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 7727436 - 7727634
Alignment:
| Q |
30 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatca |
129 |
Q |
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| T |
7727436 |
gttgtcccaatcggagaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcattgcaggagaactcaacatca |
7727535 |
T |
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| Q |
130 |
tcagcatttgatgtggagaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggag |
228 |
Q |
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| T |
7727536 |
tcagcatttgatgtggagaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacttgtttggaggagtcttcatcttaattttggag |
7727634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 228
Target Start/End: Original strand, 7699587 - 7699766
Alignment:
| Q |
46 |
aggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcatttgatgtgg |
145 |
Q |
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|||||||| ||||| || |||||||||||||||||||||||||| | ||||||||| | ||||||||| |||| || |||| || |||||| ||| |
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| T |
7699587 |
aggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagtc---atcacttgcgtttgatttgg |
7699683 |
T |
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| Q |
146 |
agaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaattttggag |
228 |
Q |
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| T |
7699684 |
agaagtagatggaagaaaggaagagaagtgttaagtggagtaggagaaacatgtttggagaagtcttcatcttaattttggag |
7699766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 7713916 - 7714102
Alignment:
| Q |
30 |
gttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatca |
129 |
Q |
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||||||||| ||| ||| |||||||| |||||||| ||||||||||||||||||||||| | ||||||||| | ||||||||| |||| | ||||| |
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| T |
7713916 |
gttgtcccagtcgtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt---catca |
7714012 |
T |
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| Q |
130 |
tcagcatttgatgtggagaagtagattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatctta |
219 |
Q |
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| T |
7714013 |
cttgcgtttgatttggagaagtagatggaagaaaggaagaagagtgttaggctgagtagcataaacatgtttggaggagtcttcatctta |
7714102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 7727686 - 7727723
Alignment:
| Q |
271 |
tttgggtgataagtatgattttaagctttgctatttat |
308 |
Q |
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| T |
7727686 |
tttgggtgataagtatggttttaatctttgctatttat |
7727723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 224
Target Start/End: Complemental strand, 12907863 - 12907694
Alignment:
| Q |
52 |
ccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcatttgatgtggagaagt |
151 |
Q |
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||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| || ||| || || || | ||| |||||| | ||||||| |
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| T |
12907863 |
ccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattggggtggcaggataaatcg---tttgaagcgtttgatttagagaagt |
12907767 |
T |
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| Q |
152 |
agattgaagaaaggaagagaagtgttaagtgcagtaggagaaacatgtttggagtagtcttcatcttaatttt |
224 |
Q |
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| T |
12907766 |
atatgaaagagaggaagatgagtgttaactggagtagaagaaacatgttaggagaagtcttcatcttaatttt |
12907694 |
T |
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