View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1070_low_7 (Length: 252)
Name: NF1070_low_7
Description: NF1070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1070_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6564851 - 6564789
Alignment:
| Q |
1 |
tctttacttatcatatccaaattacgagagtccatttcctcggggccgaagggtaagaccaac |
63 |
Q |
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| T |
6564851 |
tctttacttatcatatccaaattacgagagtccatttcctcggggccgaagggtaagaccaac |
6564789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 6564655 - 6564595
Alignment:
| Q |
184 |
tagtttgccgttttttgaaggaagtttgattgattacctgaagagtggtgtgctctctgct |
244 |
Q |
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| T |
6564655 |
tagtttgccgttttttgaaggaagtttgattgattacctgaagagtggtgtgctctctgct |
6564595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 6564761 - 6564718
Alignment:
| Q |
78 |
aaccttaaatggtcatttgtttcttaagaccttacaatcaaacc |
121 |
Q |
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| T |
6564761 |
aaccttaaatggtcatttgtttcttaagaccttacaatcaaacc |
6564718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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