View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10710_high_1 (Length: 460)
Name: NF10710_high_1
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 2666965 - 2667406
Alignment:
| Q |
1 |
gaaacagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2666965 |
gaaacagcccaagctgcaaaggacaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatg |
2667064 |
T |
|
| Q |
101 |
aaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2667065 |
aaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaagg |
2667164 |
T |
|
| Q |
201 |
tgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2667165 |
tgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtc |
2667264 |
T |
|
| Q |
301 |
gttgattgagattattagctactaatactatgtttcaataatcttgtattgtaatttgtttttcttgaatttggtttttaccaaatgcactttcttttag |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2667265 |
gttgattgagattattagc------tactatgtttcgataatgttgtattgtaatttgtttttcttgaatttggtttttaccaaatgcactttcttttag |
2667358 |
T |
|
| Q |
401 |
aataagttacgattccctcatatct--agaggtgagagggaaatgtat |
446 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
2667359 |
aataagttacgattccctcatatctagagaggtgaaagggaaatgtat |
2667406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 2675983 - 2676404
Alignment:
| Q |
1 |
gaaacagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatg |
100 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2675983 |
gaaacagcccaagcagtcaaggataaaacccaacaaacagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatg |
2676082 |
T |
|
| Q |
101 |
aaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2676083 |
aaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaagg |
2676182 |
T |
|
| Q |
201 |
tgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2676183 |
tgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtc |
2676282 |
T |
|
| Q |
301 |
gttgattgagattattagctactaatactatgtttcaataatcttgtattgtaatttgtttttcttgaatttggtttt-taccaaatgcactttctttta |
399 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| || || |
|
|
| T |
2676283 |
gttgattgagattattagc------tactatgtttcgataatgttgtattgtaatttgtttttcttgaatttggttttgaaccaaacgcacttttttata |
2676376 |
T |
|
| Q |
400 |
gaataagttacgattccctcatatctag |
427 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
2676377 |
gaataagttgcgattccctcatatctag |
2676404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 2682012 - 2682281
Alignment:
| Q |
2 |
aaacagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaagacacaactggtcaagcaagagacaagggttatga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||| || || | || |
|
|
| T |
2682012 |
aaacagcccaagctgcaaaggagaaaacccagcaagcagctcaagcaacaaaggaaaaagcccaagacacaactggtcaagctagagaaaaaggatcgga |
2682111 |
T |
|
| Q |
102 |
aatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactcagctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggt |
201 |
Q |
| |
|
|| |||||| | || ||||||||||||||||||||||| ||||||||||| ||||| || || |||||||| || ||||||||||||||||| ||| || |
|
|
| T |
2682112 |
gattggccagtcaaccaaagaaactgcccaatcaggaaaagacaactcagcagggttcttacagcagacaggagaaaaggttaagggtatggcccaaagt |
2682211 |
T |
|
| Q |
202 |
gcaactgaagcagttaagaacactttaggaatgaataatgatgaggaagacaaggaccatttcacaacaa |
271 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||| ||||||||| |
|
|
| T |
2682212 |
gctactgaagcagttaagaacacttttggaatggcacatgacgaggaagataaggaccatatcacaacaa |
2682281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 2666935 - 2666996
Alignment:
| Q |
4 |
acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaaccca |
65 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||| |
|
|
| T |
2666935 |
acagcccaagctgcaaaggagaaaacccaagaaacagcccaagctgcaaaggacaaaaccca |
2666996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 2675953 - 2676015
Alignment:
| Q |
4 |
acagcccaagctgcaaaggagaaaacccagcaagcagcccaagcaacaaaggataaaacccaa |
66 |
Q |
| |
|
||||||||||| || ||||||||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
2675953 |
acagcccaagcagctaaggagaaaacccaggaaacagcccaagcagtcaaggataaaacccaa |
2676015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University