View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_high_13 (Length: 247)
Name: NF10710_high_13
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 26799792 - 26799651
Alignment:
| Q |
96 |
gataaaattgtctgtgtataaatactttatattgaagtagcaaaacctgaatcaaacctgagaaatggaggcatttaaagtagcaagtgaaggagttgtt |
195 |
Q |
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| T |
26799792 |
gataaaattgtctgtgtataaatactttatattgaagtagcaaaacctgaatcacacttgagaaatggaggcatttaaagtagcaagtgaaggagttggt |
26799693 |
T |
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| Q |
196 |
atgcaacttgaattcatatggaagaatatcagagaacctttg |
237 |
Q |
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| T |
26799692 |
atgcaacttgagttcatatggaagaatatcagagaacctttg |
26799651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 26823822 - 26823743
Alignment:
| Q |
158 |
aaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttg |
237 |
Q |
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| T |
26823822 |
aaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgagttcatatggaagaatatcagagaacctttg |
26823743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 26799838 - 26799780
Alignment:
| Q |
18 |
agaaggaggtgatttattttatattatagctgttgtactcgtcaaagataaaattgtct |
76 |
Q |
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| T |
26799838 |
agaaggaggtgatttattttatattatagctgttgtactcgtcacagataaaattgtct |
26799780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 26786952 - 26786875
Alignment:
| Q |
160 |
atggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttg |
237 |
Q |
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| T |
26786952 |
atggaggtgtttcaagtagctagtgaaggagttggtatgcaacttgcgtttatttggaggaaaataagagaacctttg |
26786875 |
T |
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