View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10710_high_15 (Length: 240)
Name: NF10710_high_15
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_high_15 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 11491916 - 11492112
Alignment:
| Q |
18 |
ttctcaaacacttaacgagcactagcttcatctttttcactaaatccctattaacttttcaaatgatgagagaagatgaagaacttacatatttagaact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11491916 |
ttctcaaacacttaacgagcactagcttcatctttttcactaaatccctat-aacttttcaaatgatgagagaagatgaagaacttacatatttagaact |
11492014 |
T |
|
| Q |
118 |
atgcagaaggtgatgaaac-----------------atgacccctaattcacctataaacaattcataaaataaattgaatctaaaccaactcgagaa |
198 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11492015 |
atgcagaaggtaatgaaacaattgtgaaccatccttatgaaccctaattcacctataaacaattcataaaataaattgaatctaaaccaactcaagaa |
11492112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 11492134 - 11492177
Alignment:
| Q |
197 |
aataatcaagataatatctaaaccatttttcaaaactgcacaaa |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11492134 |
aataatcaagataatatctaaaccatttttcaaaagtgcacaaa |
11492177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 10264401 - 10264454
Alignment:
| Q |
137 |
atgacccctaattcacctataaacaattcataaaataaattgaatctaaaccaa |
190 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10264401 |
atgatccctaattcacctataaacaattcagaaaataaattgaatctaaaccaa |
10264454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 13180347 - 13180294
Alignment:
| Q |
137 |
atgacccctaattcacctataaacaattcataaaataaattgaatctaaaccaa |
190 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
13180347 |
atgatccccaattcacctacaaacaattcataaaataaattcaatctaaaccaa |
13180294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 10264296 - 10264371
Alignment:
| Q |
56 |
actaaatccctattaacttttcaaatgatgagagaagatgaagaacttacatatttagaactatgcagaaggtgatgaaa |
135 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||||| | ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
10264296 |
actaaatccctat-aacttttcaaataacaagagaagatgagca---tacatatttagaactatacagaaggagatgaaa |
10264371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 24557596 - 24557486
Alignment:
| Q |
21 |
tcaaacacttaacgagcactagcttcatctttttcactaaatccctattaacttttcaaatgatgagagaagatgaagaacttacatatttagaactatg |
120 |
Q |
| |
|
||||||||||| | |||| | |||||||||||||||||||||| |||| |||||||||||| | |||| |||||||||||||||| |||| |||||||| |
|
|
| T |
24557596 |
tcaaacactta-caagcatttgcttcatctttttcactaaatctctat-aacttttcaaataaggaga--agatgaagaacttacaaatttggaactatg |
24557501 |
T |
|
| Q |
121 |
cagaaggtgatgaaa |
135 |
Q |
| |
|
|| | ||||||||| |
|
|
| T |
24557500 |
catcaagtgatgaaa |
24557486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 444665 - 444603
Alignment:
| Q |
137 |
atgacccctaattcacctataaacaattcataaaataaattgaatctaaaccaactcgagaat |
199 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||||| || |||| ||||||| || ||||| |
|
|
| T |
444665 |
atgatccccaattcacctacaaacaattcataaaataacttcaatcgaaaccaattccagaat |
444603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University