View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10710_high_2 (Length: 421)
Name: NF10710_high_2
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 24223907 - 24224299
Alignment:
| Q |
11 |
catagggaaattatatatatgtgaagtggggtacatactaaggcctgcttttcatccttacattattgtaaacgaatggcatgaaaggagaatgcaactt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24223907 |
catagggaaattatatatatgtgaagtggggtacatactaaggcctgcttttcatccttacattattgtaaacgaatggcatgaaaggagaatgcaactt |
24224006 |
T |
|
| Q |
111 |
cctatagtacttgagacaaattaaaagacaaaaatataagttataaggaatgaaaaactgggtcatggtattgagaacaaaattttgtctctttgcttct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24224007 |
cctatagtacttgagacaaattaaaagacaaaaatataagttataaggaatgaaaaactgggtcatggtattgagaacaaaattttgtctctttgcttct |
24224106 |
T |
|
| Q |
211 |
tggcgtgtacttctttgcctacgttagcttcaaatgatatattgtctcatagacacacaatgttattatcagaaattttattaatattataattaataat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24224107 |
tggcgtgtacttctttgcctacgttagcttcaaatgatatattgtctcatagacacacaatgttattatcagaaattttattaatattata--taataat |
24224204 |
T |
|
| Q |
311 |
agttgataacaatatgtttttgtgtaatttatacagtatgctaatatattatctccaccgaatttgtctcttctaaatgagctttcacttcatat |
405 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24224205 |
atttgataacaatatgtttttgtgtaatttatacagtatgctaatatattatctccaccgaatttgtctcttctaaatgagctttcacttcatat |
24224299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University