View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_high_3 (Length: 392)
Name: NF10710_high_3
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_high_3 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 50804809 - 50805178
Alignment:
| Q |
8 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
107 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50804809 |
gagcagagactacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatct |
50804908 |
T |
|
| Q |
108 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804909 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
50805008 |
T |
|
| Q |
208 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805009 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaa |
50805108 |
T |
|
| Q |
308 |
aggttaccttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaac |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50805109 |
aggttaccttgtaagagaaccgttgcccgtcgtattctacttttggtttttttctcagactctcaaaaac |
50805178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 50871068 - 50870699
Alignment:
| Q |
8 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
107 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50871068 |
gagcagagactacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatct |
50870969 |
T |
|
| Q |
108 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870968 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
50870869 |
T |
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| Q |
208 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870868 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaa |
50870769 |
T |
|
| Q |
308 |
aggttaccttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaac |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50870768 |
aggttaccttgtaagagaaccgttgcccgtcgtattctacttttggtttttttctcagactctcaaaaac |
50870699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 19057379 - 19057034
Alignment:
| Q |
8 |
gagcagagactacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
107 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057379 |
gagcagagaatacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatct |
19057280 |
T |
|
| Q |
108 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057279 |
caatttcattcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacga |
19057180 |
T |
|
| Q |
208 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaa |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19057179 |
aaatgagaacatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagatatatgaacccgtaa |
19057080 |
T |
|
| Q |
308 |
aggttaccttgtaagagaaccgttgcccgtcgtattctacttttgg |
353 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057079 |
aggataccttgtaagagaaccgttgcccgtcgtattctacttttgg |
19057034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 222 - 353
Target Start/End: Complemental strand, 40705780 - 40705653
Alignment:
| Q |
222 |
tagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaa |
321 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| |
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| T |
40705780 |
tagacaaaaaacaaacaa---atgaataagttatttgctaaaggagtatttaaatataaaactgtt-aagatatatgaacccgtaaaagttaccttgtaa |
40705685 |
T |
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| Q |
322 |
gagaaccgttgcccgtcgtattctacttttgg |
353 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40705684 |
gagaaccgttgcccgtcgtattctacttttgg |
40705653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 227 - 377
Target Start/End: Original strand, 11181 - 11330
Alignment:
| Q |
227 |
aaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaa |
326 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||| | |
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| T |
11181 |
aaaaaaaaaacaacagatgaagaagttatttgctaaaggagtatttaaatataaaattg-ttaagatatatgaacccgtaaaggttaccttgtaagagta |
11279 |
T |
|
| Q |
327 |
ccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaac |
377 |
Q |
| |
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| ||| || |||||| ||||||||||| ||||||||||||||||| |
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| T |
11280 |
ctgtttcctgtcgtactctacttttgggtttttcctcagactctcaaaaac |
11330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
77 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
167 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
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| Q |
168 |
cgtaggtagaaccatcttg |
186 |
Q |
| |
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||||||||||||||||||| |
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| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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