View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10710_high_6 (Length: 332)

Name: NF10710_high_6
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10710_high_6
NF10710_high_6
[»] chr4 (10 HSPs)
chr4 (4-290)||(2741674-2741960)
chr4 (94-332)||(2741964-2742202)
chr4 (85-290)||(2741355-2741559)
chr4 (248-310)||(10355306-10355368)
chr4 (268-305)||(51536491-51536528)
chr4 (249-301)||(9322343-9322395)
chr4 (249-301)||(9334304-9334356)
chr4 (249-301)||(9376822-9376874)
chr4 (275-311)||(13584821-13584857)
chr4 (270-306)||(54441180-54441216)
[»] chr6 (5 HSPs)
chr6 (245-310)||(8493686-8493751)
chr6 (246-303)||(1955362-1955419)
chr6 (265-301)||(33099387-33099423)
chr6 (243-298)||(7337575-7337630)
chr6 (257-313)||(24341488-24341544)
[»] chr7 (3 HSPs)
chr7 (269-310)||(31580902-31580943)
chr7 (265-310)||(6856547-6856592)
chr7 (275-311)||(9718554-9718590)
[»] chr3 (3 HSPs)
chr3 (246-310)||(41816886-41816950)
chr3 (274-307)||(41148080-41148113)
chr3 (270-306)||(41817605-41817641)
[»] chr2 (5 HSPs)
chr2 (248-306)||(1465833-1465891)
chr2 (245-298)||(40288206-40288259)
chr2 (266-298)||(12027803-12027835)
chr2 (246-293)||(19853930-19853977)
chr2 (245-289)||(32650267-32650311)
[»] scaffold0736 (1 HSPs)
scaffold0736 (246-293)||(749-796)
[»] chr1 (3 HSPs)
chr1 (269-307)||(28016577-28016615)
chr1 (246-294)||(16234116-16234164)
chr1 (275-307)||(28981644-28981676)
[»] chr5 (3 HSPs)
chr5 (275-307)||(14717362-14717394)
chr5 (243-307)||(19117301-19117365)
chr5 (269-309)||(41018314-41018354)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 2741674 - 2741960
Alignment:
Q  4 agaggagaagcaaaggaacagagtgatatgaagattgaagatcttcaaaggacacttgaatctcaggagaggaggttgccggaagaagagatgaaagaca 103  Q
    |||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  2741674 agagaagaaacaaaggaacacagtgatatgaagattgaagatcttcaaaggacacttgaatctcacgagaggaggttaccggaagaagagatgaaagaca 2741773  T
Q  104 agacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatggagggtataattgttttgaaattctaaaacacgttattttgnnnnnn 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||          
T  2741774 agacgaacaaactaacatcgaattattataaaatactaaaaccattaaagatggagggtatagttgtcttaaaattctaaaacacgttattttgaaacaa 2741873  T
Q  204 nnnnnnnnnnnnnnnnccactaaagatttggaatgaaagatgaatttaatcagtatattttatcagtgtacaattattttacacata 290  Q
                    |||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||    
T  2741874 aaataaaacacaaaaaccactaaagatttggaatgaaagaagaatttaattagtatattttgtcggtgtacaattattttacacata 2741960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 94 - 332
Target Start/End: Original strand, 2741964 - 2742202
Alignment:
Q  94 atgaaagacaagacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatggagggtataattgttttgaaattctaaaacacgttat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2741964 atgaaagacaagacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatggagggtataattgttttgaaattctaaaacacgttat 2742063  T
Q  194 tttgnnnnnnnnnnnnnnnnnnnnnnccactaaagatttggaatgaaagatgaatttaatcagtatattttatcagtgtacaattattttacacatacat 293  Q
    ||||                      ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  2742064 tttgaaacaaaaataaaacacaaaaaccactaaagatttggaatgaaagatgaatttaatcagtatattctgtcagtgtacaattattttacacatacat 2742163  T
Q  294 ctaatgatgtgttgccatgtgtgtacaattattttaaac 332  Q
    | |||||||||||||||||||| ||||||||||||||||    
T  2742164 ccaatgatgtgttgccatgtgtatacaattattttaaac 2742202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 85 - 290
Target Start/End: Original strand, 2741355 - 2741559
Alignment:
Q  85 gaagaagagatgaaagacaagacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatggagggtataattgttttgaaattctaaa 184  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  2741355 gaagaagatatgaaaaacaagacgaacaaactaacaccgaattattataaaatactaaaaccactaaagatgga-ggtatagttgtcttgaaattctaaa 2741453  T
Q  185 acacgttattttgnnnnnnnnnnnnnnnnnnnnnnccactaaagatttggaatgaaagatgaatttaatcagtatattttatcagtgtacaattatttta 284  Q
    |||||||||||||                      |||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||||||||||    
T  2741454 acacgttattttgaaacaaaaataaaacacaaaaaccactaaagatttggaatgaaagaagaatttaattactatattttgtcagtgtacaattatttta 2741553  T
Q  285 cacata 290  Q
    ||||||    
T  2741554 cacata 2741559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 10355368 - 10355306
Alignment:
Q  248 tttaatcagtatattttatcagtgtacaattattttacacatacatctaatgatgtgttgcca 310  Q
    |||||| ||||| |||| || ||||| |||||||||||| |||||| |||| |||||||||||    
T  10355368 tttaattagtatgttttgtcggtgtataattattttacatatacatataattatgtgttgcca 10355306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 51536528 - 51536491
Alignment:
Q  268 agtgtacaattattttacacatacatctaatgatgtgt 305  Q
    ||||||||||||||||||||||| || |||||||||||    
T  51536528 agtgtacaattattttacacatatatttaatgatgtgt 51536491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 9322343 - 9322395
Alignment:
Q  249 ttaatcagtatattttatcagtgtacaattattttacacatacatctaatgat 301  Q
    ||||| |||||||||| | ||||||||||||||||||| ||| ||||| ||||    
T  9322343 ttaattagtatattttgttagtgtacaattattttacatatatatctactgat 9322395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 9334304 - 9334356
Alignment:
Q  249 ttaatcagtatattttatcagtgtacaattattttacacatacatctaatgat 301  Q
    ||||| |||||||||| | ||||||||||||||||||| ||| ||||| ||||    
T  9334304 ttaattagtatattttgttagtgtacaattattttacatatatatctactgat 9334356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 9376822 - 9376874
Alignment:
Q  249 ttaatcagtatattttatcagtgtacaattattttacacatacatctaatgat 301  Q
    ||||| |||||||||| | ||||||||||||||||||| ||| ||||| ||||    
T  9376822 ttaattagtatattttgttagtgtacaattattttacatatatatctactgat 9376874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 13584857 - 13584821
Alignment:
Q  275 aattattttacacatacatctaatgatgtgttgccat 311  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  13584857 aattattttacacatgcatctaatgatgtgtttccat 13584821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 54441180 - 54441216
Alignment:
Q  270 tgtacaattattttacacatacatctaatgatgtgtt 306  Q
    ||||||||||||||||| || ||||||||||||||||    
T  54441180 tgtacaattattttacatatgcatctaatgatgtgtt 54441216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 8493686 - 8493751
Alignment:
Q  245 gaatttaatcagtatattttatcagtgtacaattattttacacatacatctaatgatgtgttgcca 310  Q
    ||||||||| |||||| | | || |||||||||||||||||||||||||||||||||| |||||||    
T  8493686 gaatttaataagtataatatgtcggtgtacaattattttacacatacatctaatgatgcgttgcca 8493751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 1955419 - 1955362
Alignment:
Q  246 aatttaatcagtatattttatcagtgtacaattattttacacatacatctaatgatgt 303  Q
    |||||||| ||||||  || |||||||||||||||||||||||||||| |||| ||||    
T  1955419 aatttaattagtatacattgtcagtgtacaattattttacacatacatttaattatgt 1955362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 33099387 - 33099423
Alignment:
Q  265 atcagtgtacaattattttacacatacatctaatgat 301  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33099387 atcagtgtacaattattttacacattcatctaatgat 33099423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 7337575 - 7337630
Alignment:
Q  243 atgaatttaatcagtatattttatcagtgtacaattattttacacatacatctaat 298  Q
    |||| |||||| |||||||||| | |||||||||||||||||||||  ||||||||    
T  7337575 atgagtttaattagtatattttgtgagtgtacaattattttacacaagcatctaat 7337630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 24341544 - 24341488
Alignment:
Q  257 tatattttatcagtgtacaattattttacacatacatctaatgatgtgttgccatgt 313  Q
    |||| ||| ||| ||||||||||||||||| || ||||||||||| ||||| |||||    
T  24341544 tatactttctcattgtacaattattttacatatgcatctaatgatatgttgacatgt 24341488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 31580902 - 31580943
Alignment:
Q  269 gtgtacaattattttacacatacatctaatgatgtgttgcca 310  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  31580902 gtgtacaattattttacacatatatctaatgatgtgttgcca 31580943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 6856547 - 6856592
Alignment:
Q  265 atcagtgtacaattattttacacatacatctaatgatgtgttgcca 310  Q
    |||||||||||| |||||||||||| |||| |||| ||||||||||    
T  6856547 atcagtgtacaactattttacacatgcatcaaatggtgtgttgcca 6856592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 9718590 - 9718554
Alignment:
Q  275 aattattttacacatacatctaatgatgtgttgccat 311  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  9718590 aattattttacacatgcatctaatgatgtgtttccat 9718554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 41816886 - 41816950
Alignment:
Q  246 aatttaatcagtatattttatcagtgtacaattattttacacatacatctaatgatgtgttgcca 310  Q
    |||||||||||||||||||||| || ||||||||||||||| || ||| |||| || ||||||||    
T  41816886 aatttaatcagtatattttatcggtttacaattattttacaaatgcatttaataatttgttgcca 41816950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 41148113 - 41148080
Alignment:
Q  274 caattattttacacatacatctaatgatgtgttg 307  Q
    ||||||||||||||| ||||||||||||||||||    
T  41148113 caattattttacacacacatctaatgatgtgttg 41148080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 41817641 - 41817605
Alignment:
Q  270 tgtacaattattttacacatacatctaatgatgtgtt 306  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  41817641 tgtacatttattttacacatacatttaatgatgtgtt 41817605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 1465891 - 1465833
Alignment:
Q  248 tttaatcagtatattttatcagtgtacaattattttacacatacatctaatgatgtgtt 306  Q
    |||||| |||||| |  ||||||||||||||||||||||||| |||| |||||||||||    
T  1465891 tttaattagtatactcgatcagtgtacaattattttacacatgcatccaatgatgtgtt 1465833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 40288259 - 40288206
Alignment:
Q  245 gaatttaatcagtatattttatcagtgtacaattattttacacatacatctaat 298  Q
    |||||||||||||||||||| | | | |||||||||||||||||||||| ||||    
T  40288259 gaatttaatcagtatattttgttaatatacaattattttacacatacatttaat 40288206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 298
Target Start/End: Complemental strand, 12027835 - 12027803
Alignment:
Q  266 tcagtgtacaattattttacacatacatctaat 298  Q
    |||||||||||||||||||||||||||||||||    
T  12027835 tcagtgtacaattattttacacatacatctaat 12027803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 19853977 - 19853930
Alignment:
Q  246 aatttaatcagtatattttatcagtgtacaattattttacacatacat 293  Q
    |||||||| ||||||||||||| ||||| ||||| |||||||||||||    
T  19853977 aatttaattagtatattttatcggtgtataattagtttacacatacat 19853930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 32650311 - 32650267
Alignment:
Q  245 gaatttaatcagtatattttatcagtgtacaattattttacacat 289  Q
    ||||||||| |||||| ||||| |||||| |||||||||||||||    
T  32650311 gaatttaattagtatagtttatgagtgtataattattttacacat 32650267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0736 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0736
Description:

Target: scaffold0736; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 749 - 796
Alignment:
Q  246 aatttaatcagtatattttatcagtgtacaattattttacacatacat 293  Q
    |||||||| ||||||||||||| ||||| ||||| |||||||||||||    
T  749 aatttaattagtatattttatcggtgtataattagtttacacatacat 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 28016577 - 28016615
Alignment:
Q  269 gtgtacaattattttacacatacatctaatgatgtgttg 307  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  28016577 gtgtacaattattttacacatacattcaatgatgtgttg 28016615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 16234164 - 16234116
Alignment:
Q  246 aatttaatcagtatattttatcagtgtacaattattttacacatacatc 294  Q
    |||||||| | |||||||| ||| ||||||||||||||||| |||||||    
T  16234164 aatttaattaatatattttgtcactgtacaattattttacatatacatc 16234116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 28981644 - 28981676
Alignment:
Q  275 aattattttacacatacatctaatgatgtgttg 307  Q
    ||||||||||||||||||| |||||||||||||    
T  28981644 aattattttacacatacatttaatgatgtgttg 28981676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 14717394 - 14717362
Alignment:
Q  275 aattattttacacatacatctaatgatgtgttg 307  Q
    ||||||||||||||| |||||||||||||||||    
T  14717394 aattattttacacatgcatctaatgatgtgttg 14717362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 19117365 - 19117301
Alignment:
Q  243 atgaatttaatcagtatattttatcagtgtacaattattttacacatacatctaatgatgtgttg 307  Q
    |||| |||||| | |||||| | ||| |||||||||||||||||||| |||| ||| ||||||||    
T  19117365 atgagtttaattaatatattatgtcaatgtacaattattttacacatgcatccaataatgtgttg 19117301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 41018354 - 41018314
Alignment:
Q  269 gtgtacaattattttacacatacatctaatgatgtgttgcc 309  Q
    |||||||||  |||||||||| |||||||||||||||||||    
T  41018354 gtgtacaatagttttacacatgcatctaatgatgtgttgcc 41018314  T

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