View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_10 (Length: 358)
Name: NF10710_low_10
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_10 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: scaffold0172 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 28055 - 27716
Alignment:
| Q |
1 |
agaccacatgtaagaaagcctaacctccttgaagattacggtcaaggataatggggagatgatatccctaaaagatgatccttcatgaaaaataggagat |
100 |
Q |
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| T |
28055 |
agaccacatgtaagaaagcctaacctccttgaagattacggtcaaggataatggggagatgatatccctaaaagatgatccttcatgaaaaataggagat |
27956 |
T |
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| Q |
101 |
agcaagacaacaaatctcaccaggatacaaaggagaagacaacagaggaaacattctacgttggaaatgcaacagatgatacgactaatagctatagtcc |
200 |
Q |
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| T |
27955 |
agcaagacaacaaatctcaccaggatacaaaggagaagacaacagaggaaacattctatgttgaaaatgcaacaggtgatacgattaataactatagtcc |
27856 |
T |
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| Q |
201 |
aagatgtgggaaagaaagaagtttcatcacctgaagtatctaaagccttagatgaagcttttccagacaattttaaagcttccctacatgaaaggttgtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
27855 |
aagatgtgggaaagaaagaagtttcatcacctgaagtatctaaagccttagatgaagcttttctagacatttttaaagcttccctacatgaaaggttgtt |
27756 |
T |
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| Q |
301 |
cttactgaaaaactaggagaaactatctcaccaatcgcat |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27755 |
cttactgaaaaactaggagaaactatctcaccaatcgcat |
27716 |
T |
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