View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_11 (Length: 352)
Name: NF10710_low_11
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 45205459 - 45205796
Alignment:
| Q |
7 |
atatgcaccccatctgctgtaactgtataaagaggtcatatttccaattttaattcaccatgcaactaatgttagccaattgctaataaaatgtaatcaa |
106 |
Q |
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| T |
45205459 |
atatgcaccccatctgctgtaactgtataaagaggtcacatttccaagtttaattcaccatgcaactaatgttagccaattgctaataaaatgtaatcaa |
45205558 |
T |
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| Q |
107 |
ggaagaaaacaaaatcaatcacatgacatttaccttgattcgtcattgattttatcaaaacggattccttgagaatatgcgaacctgtgagcctctgagg |
206 |
Q |
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| T |
45205559 |
ggaagaaaacaaaatcaatcacatgacatttaccttgattcgtcattgattttatcaaaacggattccttcagaatatgcgaacctatgagcctctgagg |
45205658 |
T |
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| Q |
207 |
cgacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctgcataattaca |
306 |
Q |
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| T |
45205659 |
cgacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaagagaaaatgacctgcgtaattaca |
45205758 |
T |
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| Q |
307 |
ataattcataaataaaatcagaaatattgcttcttctc |
344 |
Q |
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| T |
45205759 |
ataattcataaataaaatcagaaatattgcttcttctc |
45205796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 136 - 306
Target Start/End: Original strand, 45247219 - 45247389
Alignment:
| Q |
136 |
ttaccttgattcgtcattgattttatcaaaacggattccttgagaatatgcgaacctgtgagcctctgaggcgacattaacaattcttccttctttctta |
235 |
Q |
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| T |
45247219 |
ttaccttgattggtcattaattttgtcaaaacggattccttcagaatatgcaaatgtgtaagcctctccagagacattaacaattcttccttctttctta |
45247318 |
T |
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| Q |
236 |
cttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctgcataattaca |
306 |
Q |
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| T |
45247319 |
ctttggtgtgctgtttttttcattgtgtccaacaaaagatttgtcaagagaaaatgacctgcacaattaca |
45247389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 136 - 296
Target Start/End: Original strand, 45212448 - 45212608
Alignment:
| Q |
136 |
ttaccttgattcgtcattgattttatcaaaacggattccttgagaatatgcgaacctgtgagcctctgaggcgacattaacaattcttccttctttctta |
235 |
Q |
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| T |
45212448 |
ttaccttgattgttcattaattttgtcaaaacggattccttcagaatatgcaaatttgtgagcttctgaggagacattaacaattcttccttcagtctta |
45212547 |
T |
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| Q |
236 |
cttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctg |
296 |
Q |
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| T |
45212548 |
ctttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagagaaaatgacctg |
45212608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 136 - 306
Target Start/End: Original strand, 45231384 - 45231554
Alignment:
| Q |
136 |
ttaccttgattcgtcattgattttatcaaaacggattccttgagaatatgcgaacctgtgagcctctgaggcgacattaacaattcttccttctttctta |
235 |
Q |
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| T |
45231384 |
ttaccttgattggtcattaattttgtcaaaacggattccttcaggatatgcaaatatgtaagcttttgcggagacattaacaattcttccttctttttta |
45231483 |
T |
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| Q |
236 |
cttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctgcataattaca |
306 |
Q |
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| T |
45231484 |
ctttggtgtgctgttttcttcattgtgtccaacaaaagatttgtcaagagaaaatgacctgtacaattaca |
45231554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 296
Target Start/End: Original strand, 19277346 - 19277506
Alignment:
| Q |
136 |
ttaccttgattcgtcattgattttatcaaaacggattccttgagaatatgcgaacctgtgagcctctgaggcgacattaacaattcttccttctttctta |
235 |
Q |
| |
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|||||||||||| ||||| || ||||||||| ||||||||| | ||||| | | |||| | || || | |||||||| |||||||||||||||||| |
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| T |
19277346 |
ttaccttgattcatcattaatgttatcaaaaaggattccttcatcatatgtataaccgtgaccatcagatgagacattaataattcttccttctttcttg |
19277445 |
T |
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| Q |
236 |
cttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctg |
296 |
Q |
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| T |
19277446 |
ctttcatttgctgttttcttcatagtgtctaacaaaaggtttgttaaaagaaaatgacctg |
19277506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 296
Target Start/End: Original strand, 19294777 - 19294937
Alignment:
| Q |
136 |
ttaccttgattcgtcattgattttatcaaaacggattccttgagaatatgcgaacctgtgagcctctgaggcgacattaacaattcttccttctttctta |
235 |
Q |
| |
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||||||||| || ||||| ||||| |||||| ||||||||| || ||||| | | ||||| | || || | |||| ||| |||||||||||||||||| |
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| T |
19294777 |
ttaccttgactcatcattaattttttcaaaaaggattccttcaggatatgtgtaattgtgaccatcagatgagacaataataattcttccttctttcttg |
19294876 |
T |
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| Q |
236 |
cttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctg |
296 |
Q |
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|||| | ||||||||||||||| || |||||||| ||||| || ||||||||||||| |
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| T |
19294877 |
ctttcattagctgttttcttcatagtgtctaacaaaaggtttgttaaaagaaaatgacctg |
19294937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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