View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_12 (Length: 334)
Name: NF10710_low_12
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 21787969 - 21787664
Alignment:
| Q |
17 |
caacttcatgatcttcactttgcactttagcagtggtagatagtgctcattcaaagaaaaataaattatctgaatttgagtttatatattattcaatatg |
116 |
Q |
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| T |
21787969 |
caacttcatgatcttcactttgcactttagcggtgatagatagtgctcattcaaagaaaaataaattatctgaatttgagtttatatattca--aatacg |
21787872 |
T |
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| Q |
117 |
gtccttttagaatcaaaattaaactttgaggttgaggttttaatttgatattgatggtagcattgatgacctttgtatcgtctatgcatacactataacc |
216 |
Q |
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| T |
21787871 |
gtccttttagaatcaaaattaaactttgaggttgagtttttaatttgatattgatggcagcattgatgacctttgtatcgtctatgcatacactataacc |
21787772 |
T |
|
| Q |
217 |
ttatattagggtatttggttatgttggattttggtatctaggttagactttagaggagtgtggtttgttatacagattttcttcatgctatttaaatatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21787771 |
ttatattagggtatttggttatgttggattttggaatctaggttagactttagaggagtgtggtttgttatacagattttcttcatgctattcaaatatg |
21787672 |
T |
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| Q |
317 |
gtcctttg |
324 |
Q |
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|||||||| |
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| T |
21787671 |
gtcctttg |
21787664 |
T |
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