View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_16 (Length: 318)
Name: NF10710_low_16
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 34826720 - 34826414
Alignment:
| Q |
1 |
tcccgcatggctgctgtctctctgatctcccttatcagcatcaattaatgaataacgtatttcaaatgaaattattaagattaaatgcaaatacaaataa |
100 |
Q |
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| T |
34826720 |
tcccgcatggctgctatctctctgatctcccttatcagcatcaattaatgaataacgtatttcaaatgaaattattaagattaaatgcaaatacaaataa |
34826621 |
T |
|
| Q |
101 |
ttcgaggacattcattgtgttgtcataagctacactatcacaacttaatgatggtagtaataatttgatttgcgaaagggaagaacacatg----nnnnn |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826620 |
ttcgaggacattcattgtgttgtcataagctacactatcacaacttaatgatggtagtaataatttgatttgcgaaagggaagaacacatgtctttttaa |
34826521 |
T |
|
| Q |
197 |
nncnnnnnnnnttaggaaaagaagaacacacatgaaaagcaaattatgtccacatgcatatactagcggcaatcgacaaacacatgttgtttataaattt |
296 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34826520 |
aaaaaaagaaattaggaaaagaaga--acacatgaaaagcaaattatgtccacatgcatatactagcggcaatcgacaaacacatgttgattataaattt |
34826423 |
T |
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| Q |
297 |
ggttggtct |
305 |
Q |
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||||||||| |
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| T |
34826422 |
ggttggtct |
34826414 |
T |
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