View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_17 (Length: 317)
Name: NF10710_low_17
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 53424580 - 53424378
Alignment:
| Q |
24 |
ggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgatttcccagcaaccgtggtaagaacaaaagatgctgccacaa |
123 |
Q |
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| T |
53424580 |
ggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgacttcccagcaaccgtggtaagaacaagagatgctgccacaa |
53424481 |
T |
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| Q |
124 |
tcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacggtatatcaagaagattaatggatatacaccatcaatataaa |
223 |
Q |
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| T |
53424480 |
tcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacggtatatcaagaagattaatggatatacaccatcaatataaa |
53424381 |
T |
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| Q |
224 |
gtt |
226 |
Q |
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||| |
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| T |
53424380 |
gtt |
53424378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 53424158 - 53424066
Alignment:
| Q |
217 |
atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
309 |
Q |
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| T |
53424158 |
atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
53424066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 48373985 - 48374134
Alignment:
| Q |
24 |
ggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaacaaaagatgctgcca |
120 |
Q |
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| T |
48373985 |
ggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatcaaaagatgttgtca |
48374084 |
T |
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| Q |
121 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta |
170 |
Q |
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| T |
48374085 |
cactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta |
48374134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 53431666 - 53431594
Alignment:
| Q |
84 |
ttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
156 |
Q |
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| T |
53431666 |
ttcccagcaacagtggtaagatcaaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat |
53431594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
| Q |
121 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt |
166 |
Q |
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|||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
53308955 |
caatactccaatatgtcaattcaacaaggtaagcattataaagttt |
53308910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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