View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_18 (Length: 295)
Name: NF10710_low_18
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 28320202 - 28319934
Alignment:
| Q |
11 |
cataggctatatttaataattaaatttggaaatcatgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattatt |
110 |
Q |
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| T |
28320202 |
cataggctatatttaataattaaatttggaaatcatgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattatt |
28320103 |
T |
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| Q |
111 |
gcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28320102 |
gcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttca |
28320003 |
T |
|
| Q |
211 |
agttacctttcttacaagcagttgtgaaggaaacctttaggttgcacccaccaattccattattgttac |
279 |
Q |
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| T |
28320002 |
agttacctttcttacaagcagttgtgaaagaaacctttaggttgcacccaccaattccattattgttac |
28319934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 28296354 - 28296105
Alignment:
| Q |
27 |
taattaaatttggaaatcatgttttg-ttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgt |
125 |
Q |
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||||| || |||||||| ||||||| |||||| || ||||||||||| ||||||||||||||||||| |||||||||||||| || |||||| ||||| |
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| T |
28296354 |
taattgaacttggaaatgatgtttttcttaggatttgtttgttgctggtattgacacaacatcaagcacgattgaatggattatggcggagctattacgt |
28296255 |
T |
|
| Q |
126 |
aatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttgaagttacctttcttac |
225 |
Q |
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| T |
28296254 |
aaccctgacaaattaacaaaagtaagaaaggagttatgtcaagcaattggaaaagatgaaactgttgaagaatcaaatatttccaagttaccttacttac |
28296155 |
T |
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| Q |
226 |
aagcagttgtgaaggaaacctttaggttgcacccaccaattccattattg |
275 |
Q |
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|||||||||||||||||||| || |||||||||||||| |||||||||| |
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| T |
28296154 |
aagcagttgtgaaggaaacccttcggttgcacccaccagctccattattg |
28296105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 39 - 275
Target Start/End: Original strand, 28290625 - 28290861
Alignment:
| Q |
39 |
gaaatcatgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaat |
138 |
Q |
| |
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||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||| || | |||||||||||| || ||| ||| |
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| T |
28290625 |
gaaatgatgttttgttaggatttatttgctgctgggattgacacaacttcaagcacaattgaatggatcatggtagagctactacgcaaccctagcaata |
28290724 |
T |
|
| Q |
139 |
taacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttgaagttacctttcttacaagcagttgtgaa |
238 |
Q |
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| ||||||| ||||| ||| |||| | || ||||| |||| ||||| |||||||||||| | ||||| ||||| ||||||||||||||||||||||| |
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| T |
28290725 |
tgacaaaagcaagaacagaattatctaaagttattggtaaagatgaaataattgaagaatcagatatttttaagttgcctttcttacaagcagttgtgaa |
28290824 |
T |
|
| Q |
239 |
ggaaacctttaggttgcacccaccaattccattattg |
275 |
Q |
| |
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|||||||||| | ||||| |||||| |||||||||| |
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| T |
28290825 |
ggaaacctttcgattgcatccaccagctccattattg |
28290861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 28329026 - 28328786
Alignment:
| Q |
33 |
aatttggaaatcatgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctg |
132 |
Q |
| |
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||||||||||| || ||||| |||| |||||| |||||||||||||||||||||||| || |||||||||| ||| ||||||||| ||||||| |||| |
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| T |
28329026 |
aatttggaaattatattttggcaggatttattttttgctgggattgacacaacatcaaacacgattgaatggactatggcagagctattacgtaaccctg |
28328927 |
T |
|
| Q |
133 |
acaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttgaagttacctttcttacaagcagt |
232 |
Q |
| |
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|||| || |||| ||||||||| ||||||||| ||| || |||| |||| | || ||||||||| | |||| |||||||||| |||||||||||| |
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| T |
28328926 |
gcaaactagataaagcaagaaaagaattatgtcaagtaatgggaaaagatgaagcaatagaagaatcaaatatttccaagttaccttacttacaagcagt |
28328827 |
T |
|
| Q |
233 |
tgtgaaggaaacctttaggttgcacccaccaattccattat |
273 |
Q |
| |
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||||||||||||| || | |||||||||||| |||||||| |
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| T |
28328826 |
tgtgaaggaaacccttcgattgcacccaccagctccattat |
28328786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 28307300 - 28307119
Alignment:
| Q |
78 |
gacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggca |
177 |
Q |
| |
|
||||| |||||||||| ||||| ||| | || ||||||||| || |||||||||| |||||| |||||| |||||||||||||||| || |||||| | |
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| T |
28307300 |
gacactacatcaagcaccattgagtgggtcatggcagagctattaggtaatcctgaaaaattagcaaaagcaagaaaagagttatgtaaagaaattggta |
28307201 |
T |
|
| Q |
178 |
aaggtgaaaccattgaagaatcacacattttgaagttacctttcttacaagcagttgtgaaggaaacctttaggttgcaccc |
259 |
Q |
| |
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||| |||||| |||||||||||||| |||| | |||||| || ||||||||||| |||||||||||||||||||||||||| |
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| T |
28307200 |
aagatgaaacaattgaagaatcacatatttccatgttaccatttttacaagcagtggtgaaggaaacctttaggttgcaccc |
28307119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 46 - 263
Target Start/End: Complemental strand, 28303510 - 28303292
Alignment:
| Q |
46 |
tgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaa |
145 |
Q |
| |
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|||||||||| || ||||||||||| |||||||||||| ||||||| | ||||| ||| |||| |||||||||||| |||| || ||| ||||| ||| |
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| T |
28303510 |
tgttttgttatgatttatttgttgccgggattgacacatcatcaaggacgattgagtgggttatggcagagctactatgtaacccaaacacattaaaaaa |
28303411 |
T |
|
| Q |
146 |
agt-aagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttgaagttacctttcttacaagcagttgtgaaggaaac |
244 |
Q |
| |
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| |||||||||||||||| || ||||||| |||| |||||| |||||||||||||| | || ||||| ||||| |||||||| |||||||||||||| |
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| T |
28303410 |
aaccaagaaaagagttatgtgaagcaattggtaaagatgaaacaattgaagaatcacatacatttaagttgccttttttacaagcggttgtgaaggaaac |
28303311 |
T |
|
| Q |
245 |
ctttaggttgcacccacca |
263 |
Q |
| |
|
|| |||||||||||||| |
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| T |
28303310 |
tcttcggttgcacccacca |
28303292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 28317069 - 28317131
Alignment:
| Q |
182 |
tgaaaccattgaagaatcacacattttgaagttacctttcttacaagcagttgtgaaggaaac |
244 |
Q |
| |
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|||||||||||| ||||| || |||| ||||||||||||||||||||| |||||||| |||| |
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| T |
28317069 |
tgaaaccattgaggaatctcatatttacaagttacctttcttacaagcaattgtgaagaaaac |
28317131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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