View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_20 (Length: 281)
Name: NF10710_low_20
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 39396305 - 39396053
Alignment:
| Q |
10 |
gcatagggacgtgagaaaggaataccaaacattggagttgtgtgtttggaatatttaagttgtgccaccgtgattttagcaaaaaactgcactttgaaac |
109 |
Q |
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| T |
39396305 |
gcatagggacgtgagaaaggaataccaaacattggagtagtgtgtttggaatatttaagttgtgccaccgtgattttagcaaaaaactgcactttgaaac |
39396206 |
T |
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| Q |
110 |
ttcaacaaaatctcaattaccacattgatttcgtcaaacttagtgcaatgtgtcgccgcaaatttagcaaaaattacacttcgagcttcaaaagaatccc |
209 |
Q |
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| T |
39396205 |
ttcaacaaaatctcaattaccacattgatttcgtcaaacttagtgcaatgtgtcgccgcaaatttagcaaaaattacacttcgagcttcaaaagaatccc |
39396106 |
T |
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| Q |
210 |
agaatccaccatgatttcatcaaacttagtgtgtgttagtggtaaaaattgat |
262 |
Q |
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| T |
39396105 |
agaatccaccatgatttcatcaaacttagtgtgtgttagtggtaaaaattgat |
39396053 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 17899465 - 17899511
Alignment:
| Q |
74 |
ccaccgtgattttagcaaaaaactgcactttgaaacttcaacaaaatc |
121 |
Q |
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| T |
17899465 |
ccaccgtgattttagcaaaaa-ctatactttgaaacttcaacaaaatc |
17899511 |
T |
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