View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10710_low_21 (Length: 274)
Name: NF10710_low_21
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 32548295 - 32548027
Alignment:
| Q |
1 |
tatctttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32548295 |
tatccttaatttgattttattcttttaacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgt |
32548196 |
T |
|
| Q |
101 |
gtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaatgttgttgttgtttcttgattgaaaatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32548195 |
gtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgtatgttgttgttgtttcttgattgaaaatta |
32548096 |
T |
|
| Q |
201 |
tctgcattcttctctctaattatttttcattttccagattaaagaaataaataaaaatttggatctcct |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32548095 |
tctgcattcttctctctaattatttttcattttccagattaaagaaataattaaaaatttggatctcct |
32548027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 35770723 - 35770817
Alignment:
| Q |
9 |
atttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgtgtg |
103 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| || || |||||| ||||||| |
|
|
| T |
35770723 |
atttgatttgattcttctcacttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattaaataaattggatgtgtg |
35770817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 46251739 - 46251790
Alignment:
| Q |
5 |
tttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaa |
56 |
Q |
| |
|
||||||||||| | |||||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
46251739 |
tttaatttgatatgattcttgtcactttaatcgcacaataaaagaaggtaaa |
46251790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 46251917 - 46251965
Alignment:
| Q |
72 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg |
120 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| |||| ||||||||||| |
|
|
| T |
46251917 |
ttgttatgggaattgaagatattgaaggtgtgagaaaattggagtgatg |
46251965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 33370499 - 33370231
Alignment:
| Q |
1 |
tatctttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33370499 |
tatctttaatttaattttattcttttcacttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaagaaattgaatgt |
33370400 |
T |
|
| Q |
101 |
gtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaatgttgttgttgtttcttgattgaaaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33370399 |
gtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatgattgaaaatta |
33370300 |
T |
|
| Q |
201 |
tctgcattcttctctctaattatttttcattttccagattaaagaaataaataaaaatttggatctcct |
269 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33370299 |
tctgcattcttctctctcattatttttcattttccagattaaaaaaataaataaaaatttggatctcct |
33370231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 32944108 - 32943839
Alignment:
| Q |
1 |
tatctttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattgaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32944108 |
tatctttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaaataaggtaatttgatttgttatgggagttgaagaaattgaatgg |
32944009 |
T |
|
| Q |
101 |
gtgggaaatttggagtgatgatgagtttgaaagga-ttttgaggaatatgctttatgtggtgtgatgatgaatgttgttgttgtttcttgattgaaaatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32944008 |
gtgggaaatttggagtgatgatgagtttgaaaggatttttgaggaatatgctttatgtgatgtgatgatgaatgttgttgttgtttcatgattgaaaatt |
32943909 |
T |
|
| Q |
200 |
atctgcattcttctctctaattatttttcattttccagattaaagaaataaataaaaatttggatctcct |
269 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32943908 |
atctgcattcttctctctcattatttttcattttccagattaaaaaaataaataaaaatttggatctcct |
32943839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 49288266 - 49288180
Alignment:
| Q |
9 |
atttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttgatttgttatgggagttgaagaaattg |
95 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
49288266 |
atttgattttattcttctcacttgaatctcacgataatagaaggtaaaataaggtaatttgatttgttatgggaattgaataaattg |
49288180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 49085949 - 49085898
Alignment:
| Q |
125 |
gtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaatgttgttgtt |
181 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
49085949 |
gtttgaaaggattttgaggaataagcttta-----tgtgatgatgaatgttgttgtt |
49085898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 26893806 - 26893705
Alignment:
| Q |
72 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaa |
171 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||| |||| || ||||| ||| ||||||||||||||| | | |||||||||| |
|
|
| T |
26893806 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagt---gatgggtatgaaaagatattgaggaatatgcttca-----tatgatgatgaa |
26893715 |
T |
|
| Q |
172 |
tgttgttgtt |
181 |
Q |
| |
|
|||||||||| |
|
|
| T |
26893714 |
tgttgttgtt |
26893705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 26899245 - 26899144
Alignment:
| Q |
72 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatgatgagtttgaaaggattttgaggaatatgctttatgtggtgtgatgatgaa |
171 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||| |||| || ||||| ||| ||||||||||||||| | | |||||||||| |
|
|
| T |
26899245 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagt---gatgggtatgaaaagatattgaggaatatgcttca-----tatgatgatgaa |
26899154 |
T |
|
| Q |
172 |
tgttgttgtt |
181 |
Q |
| |
|
|||||||||| |
|
|
| T |
26899153 |
tgttgttgtt |
26899144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 4385728 - 4385788
Alignment:
| Q |
9 |
atttgattttattcttttcacttgaatctcacaataaaagaaggtaaaacaaggtaatttg |
69 |
Q |
| |
|
||||||||| |||||| |||| |||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
4385728 |
atttgatttgattcttctcacatgaatctcacgataatagaaggtaaaataaggtaatttg |
4385788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 6852238 - 6852190
Alignment:
| Q |
72 |
ttgttatgggagttgaagaaattgaatgtgtgggaaatttggagtgatg |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
6852238 |
ttgttatgggaattgaagaaattgaatgtgtaagaaatttggagcgatg |
6852190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 36234 - 36285
Alignment:
| Q |
5 |
tttaatttgattttattcttttcacttgaatctcacaataaaagaaggtaaa |
56 |
Q |
| |
|
||||||||||| | |||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
36234 |
tttaatttgatatgattcttgtcactttaatctcacaataaaagaaggtaaa |
36285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University