View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_27 (Length: 248)
Name: NF10710_low_27
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 27079779 - 27079565
Alignment:
| Q |
25 |
ggtatttcttttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggtaagt |
124 |
Q |
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| T |
27079779 |
ggtatttcttttgctggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagt |
27079680 |
T |
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| Q |
125 |
ttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttttaccacgtaccattttgac |
224 |
Q |
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| T |
27079679 |
ttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccattttgac |
27079580 |
T |
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| Q |
225 |
caaattaccctttgc |
239 |
Q |
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| T |
27079579 |
caaattaccctttgc |
27079565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 27065979 - 27065848
Alignment:
| Q |
108 |
ggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgttttta |
207 |
Q |
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| T |
27065979 |
ggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttg |
27065880 |
T |
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| Q |
208 |
ccacgtaccattttgaccaaattaccctttgc |
239 |
Q |
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| T |
27065879 |
cctcgttccattttgaccaaattgccatttgc |
27065848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 27053537 - 27053406
Alignment:
| Q |
108 |
ggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgttttta |
207 |
Q |
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| T |
27053537 |
ggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgtttttg |
27053438 |
T |
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| Q |
208 |
ccacgtaccattttgaccaaattaccctttgc |
239 |
Q |
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| T |
27053437 |
ccacgttccattttgatcaaattgccctttgc |
27053406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 14866057 - 14866160
Alignment:
| Q |
106 |
tgggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttt |
205 |
Q |
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| T |
14866057 |
tgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagataaattacctaaaaggtcgtttt |
14866156 |
T |
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| Q |
206 |
tacc |
209 |
Q |
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|||| |
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| T |
14866157 |
tacc |
14866160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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