View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_30 (Length: 241)
Name: NF10710_low_30
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_30 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 51454223 - 51454001
Alignment:
| Q |
19 |
ggagggtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcagagaatggagtttttgt |
118 |
Q |
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| T |
51454223 |
ggagggtgagtgtgactttgattttcactatataagtgactgtgtggttgttctcttcctccgccattgaaatttcgaatgcagagaatggagtttttgt |
51454124 |
T |
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| Q |
119 |
ttttcagggatttgattaattagtttaacatagaatagaggatgaaaatggcgaggtgaaggaaccctagctatggagcatgcattgcatttgggtttgt |
218 |
Q |
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| T |
51454123 |
ttttcagggatttgattaattagtttaacatagaatagaggatgaaaatggcgaggtgaaggaaccctagctatggagcatgcattgcatttgggtttgt |
51454024 |
T |
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| Q |
219 |
ttacttctactgctactgctgaa |
241 |
Q |
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| T |
51454023 |
ttacttctactgctactgctgaa |
51454001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 51478401 - 51478322
Alignment:
| Q |
23 |
ggtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag |
102 |
Q |
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| T |
51478401 |
ggtgagtatgactttgattttcactatatacgtgactatgtcattgttctcttcctcagccattgaaatttcaaatgcag |
51478322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 18076907 - 18076829
Alignment:
| Q |
24 |
gtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag |
102 |
Q |
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| T |
18076907 |
gtgagtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccatagaaatttgaaatgcag |
18076829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 18078822 - 18078747
Alignment:
| Q |
24 |
gtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatg |
99 |
Q |
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| T |
18078822 |
gtgagtctgactttgatttttactgtatatgtgactatgacgctgttctcgtcctccgccattgaaatttcaaatg |
18078747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 42431626 - 42431718
Alignment:
| Q |
25 |
tgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcagagaatggagtttttgtt |
119 |
Q |
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| T |
42431626 |
tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattgaaatttctaatgtagggaa--gagtttttgtt |
42431718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 42433442 - 42433365
Alignment:
| Q |
25 |
tgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag |
102 |
Q |
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| T |
42433442 |
tgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattgaaatttcaaatgcag |
42433365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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