View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10710_low_4 (Length: 398)

Name: NF10710_low_4
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10710_low_4
NF10710_low_4
[»] chr6 (15 HSPs)
chr6 (18-204)||(4254627-4254814)
chr6 (261-388)||(4254443-4254570)
chr6 (18-124)||(4258041-4258151)
chr6 (292-382)||(34187630-34187721)
chr6 (123-198)||(4257937-4258008)
chr6 (261-359)||(6197945-6198044)
chr6 (267-373)||(30465338-30465445)
chr6 (276-382)||(3807213-3807321)
chr6 (276-373)||(4408915-4409013)
chr6 (274-373)||(17957178-17957278)
chr6 (263-373)||(10313444-10313555)
chr6 (333-384)||(5644601-5644653)
chr6 (274-359)||(24672416-24672502)
chr6 (334-387)||(11458643-11458696)
chr6 (334-385)||(843984-844036)
[»] chr5 (14 HSPs)
chr5 (18-124)||(24093326-24093440)
chr5 (274-363)||(19343700-19343790)
chr5 (261-385)||(38948658-38948783)
chr5 (265-383)||(5459047-5459167)
chr5 (265-328)||(26724251-26724314)
chr5 (265-361)||(16089824-16089921)
chr5 (310-385)||(22860871-22860948)
chr5 (279-381)||(1298845-1298951)
chr5 (267-383)||(3746826-3746943)
chr5 (300-384)||(35270847-35270932)
chr5 (276-383)||(39057091-39057200)
chr5 (278-385)||(15070070-15070180)
chr5 (310-386)||(35529755-35529832)
chr5 (274-324)||(36235902-36235952)
[»] chr2 (8 HSPs)
chr2 (292-385)||(8794739-8794832)
chr2 (292-383)||(27694423-27694516)
chr2 (265-387)||(24490454-24490577)
chr2 (274-373)||(30640945-30641044)
chr2 (261-359)||(31994657-31994756)
chr2 (274-322)||(39293083-39293131)
chr2 (279-362)||(34904164-34904247)
chr2 (281-358)||(29242495-29242573)
[»] chr8 (9 HSPs)
chr8 (261-384)||(10467391-10467516)
chr8 (261-386)||(26938772-26938899)
chr8 (276-373)||(16483918-16484016)
chr8 (263-382)||(42023896-42024017)
chr8 (261-382)||(39344718-39344841)
chr8 (274-329)||(32797081-32797136)
chr8 (274-358)||(12597002-12597087)
chr8 (334-387)||(26938533-26938587)
chr8 (275-383)||(35054939-35055049)
[»] chr7 (12 HSPs)
chr7 (265-384)||(13009272-13009393)
chr7 (274-387)||(27567569-27567684)
chr7 (274-371)||(28098679-28098777)
chr7 (280-373)||(22485092-22485185)
chr7 (274-373)||(30851817-30851917)
chr7 (265-381)||(11297898-11298014)
chr7 (274-373)||(20132202-20132302)
chr7 (303-381)||(30851547-30851627)
chr7 (278-384)||(34471378-34471486)
chr7 (334-381)||(25411457-25411505)
chr7 (274-362)||(28564981-28565069)
chr7 (275-343)||(33991965-33992033)
[»] chr4 (7 HSPs)
chr4 (275-387)||(40391038-40391152)
chr4 (274-384)||(15025924-15026036)
chr4 (263-385)||(38377932-38378055)
chr4 (274-320)||(10574082-10574128)
chr4 (333-382)||(31049885-31049935)
chr4 (310-358)||(6449606-6449655)
chr4 (310-384)||(48282889-48282965)
[»] scaffold0233 (1 HSPs)
scaffold0233 (274-386)||(16830-16943)
[»] chr3 (9 HSPs)
chr3 (265-386)||(39340908-39341032)
chr3 (265-362)||(44446783-44446881)
chr3 (278-384)||(34359483-34359592)
chr3 (275-385)||(20315035-20315147)
chr3 (265-328)||(28769472-28769535)
chr3 (279-383)||(54783217-54783322)
chr3 (261-323)||(41544536-41544598)
chr3 (337-386)||(44648251-44648301)
chr3 (274-383)||(50334542-50334653)
[»] chr1 (5 HSPs)
chr1 (274-373)||(16545330-16545430)
chr1 (275-385)||(33752867-33752979)
chr1 (283-386)||(23230789-23230894)
chr1 (278-359)||(3891594-3891676)
chr1 (274-382)||(29307512-29307622)
[»] scaffold0020 (1 HSPs)
scaffold0020 (278-384)||(152078-152186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (265-359)||(253680-253775)
[»] scaffold0720 (1 HSPs)
scaffold0720 (292-373)||(7414-7495)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 4254814 - 4254627
Alignment:
Q  18 ctgtgctccacaccggttctagcttattacacccggaaaaacatgtcg-tcattttcatacgaattttcaaacatgcagtggtcactaccatgaaacctg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4254814 ctgtgctccacaccggttctagcttattacacccggaaaaacatgtcggtcattttcatacgaattttcaaacatgcagtggtcactaccatgaaacttg 4254715  T
Q  117 ttgcccctgatgatgaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggtttagtcctc 204  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4254714 ttgcccccgatgatgaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggtttagtcctc 4254627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 261 - 388
Target Start/End: Complemental strand, 4254570 - 4254443
Alignment:
Q  261 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 360  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4254570 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaataaggattaaaagtaaataaaattttgtgaagactaaacttaaaagcttgtaatttta 4254471  T
Q  361 tatggactaaaaaatatttaaccctatg 388  Q
    || ||| |||||||||||||||||||||    
T  4254470 tacggattaaaaaatatttaaccctatg 4254443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 4258151 - 4258041
Alignment:
Q  18 ctgtgctccacaccggttctagcttattacacccggaaaaacatgtc-gtcattttcatacgaattttca---aacatgcagtggtcactaccatgaaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||   ||||||||||||||||||| |||||||    
T  4258151 ctgtgctccacaccggttctagcttattacacccggaaaaacatgtcagtaattttcatacgaattttcacagaacatgcagtggtcactacaatgaaac 4258052  T
Q  114 ctgttgcccct 124  Q
    |||||||||||    
T  4258051 ctgttgcccct 4258041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 34187630 - 34187721
Alignment:
Q  292 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 382  Q
    ||||||| |||||||||| ||||| |||||||| |||||| ||||||||||| |||  |||||||||| || |||||||||| |||||||||    
T  34187630 taaaatgcaaatagggatgaaaagagaataaaaatttgtggagactaaacttaaaaatttgtaattttgtagggactaaaaacatatttaac 34187721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 4258008 - 4257937
Alignment:
Q  123 ctgatgatgaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggttta 198  Q
    ||||||||||||||||| |||||||||     ||||||||||||| |||||||||| |||||||||||||||||||    
T  4258008 ctgatgatgaagctgttacagtatttat----atactacatactgcaacaatattttactcttagactatggttta 4257937  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 6197945 - 6198044
Alignment:
Q  261 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaatttt 359  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||| |||  ||||||||||||| |||| ||   ||||||||||||| ||||||||||||    
T  6197945 ggacacttttattcctccaaaatagtccctataaaatgtaaataaggaccaaaagtgaataaacttttcgtagggactaaacttgaaggcttgtaatttt 6198044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 373
Target Start/End: Complemental strand, 30465445 - 30465338
Alignment:
Q  267 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatgg 365  Q
    |||||| |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| ||    
T  30465445 ttttaatcctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataagg 30465346  T
Q  366 actaaaaa 373  Q
    ||||||||    
T  30465345 actaaaaa 30465338  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 382
Target Start/End: Original strand, 3807213 - 3807321
Alignment:
Q  276 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag--actaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    ||||||||||||||| ||||||||||| | |||  ||||||||||||| |||| || ||  |||||||||||||| |||||||||| || | ||||||||    
T  3807213 tccaaaatagtccttataaaatgaaaacaaggaccaaaagtgaataaactttt-tgtaggaactaaacttgaaagtttgtaattttttaggaactaaaaa 3807311  T
Q  374 -atatttaac 382  Q
     |||||||||    
T  3807312 catatttaac 3807321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 373
Target Start/End: Complemental strand, 4409013 - 4408915
Alignment:
Q  276 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    ||||||||||||| | ||||||| ||||||| | ||||||||||| |||||||||| | || ||||||| |||| ||||||||||| |  |||||||||    
T  4409013 tccaaaatagtccctataaaatgtaaataggaactaaaagtgaataaaaattttgtaaggattaaacttaaaagtttgtaattttacagagactaaaaa 4408915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 373
Target Start/End: Original strand, 17957178 - 17957278
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 372  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||| | | |||||||  |||||||||||||||||||| | |||||||    
T  17957178 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttataaggactaaatgtgaaagcttgtaattttataagaactaaaa 17957277  T
Q  373 a 373  Q
    |    
T  17957278 a 17957278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 373
Target Start/End: Original strand, 10313444 - 10313555
Alignment:
Q  263 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattt-tgtgaagactaaacttgaaagcttgtaattttat 361  Q
    |||||||||  ||||||||||||||| | ||||||| ||||| ||| ||||| | |||||  ||| |||  ||||||||||| ||||||||||||||| |    
T  10313444 acacttttagtcctccaaaatagtccctataaaatgcaaataaggactaaaaataaataatttttctgtagagactaaacttaaaagcttgtaattttgt 10313543  T
Q  362 atggactaaaaa 373  Q
    | | ||||||||    
T  10313544 aagaactaaaaa 10313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 5644653 - 5644601
Alignment:
Q  333 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 384  Q
    |||||||||||||||  ||||||||||||| |||||||||| |||||||||||    
T  5644653 agactaaacttgaaaatttgtaattttataaggactaaaaacatatttaaccc 5644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 24672416 - 24672502
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaatttt 359  Q
    ||||||||||||||| | ||| ||| |||||||||  || ||||||||||| ||||||   ||||||||| ||||| ||||||||||    
T  24672416 cctccaaaatagtccatttaagatgcaaatagggaccaatagtgaataaaatttttgtagggactaaactagaaagtttgtaatttt 24672502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 11458696 - 11458643
Alignment:
Q  334 gactaaacttgaaagcttgtaattttatatggactaaaaaatatttaaccctat 387  Q
    ||||||||| |||| ||||||||||| || ||||||||| |||||||| |||||    
T  11458696 gactaaactcgaaaacttgtaattttgtagggactaaaatatatttaatcctat 11458643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 844036 - 843984
Alignment:
Q  334 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 385  Q
    ||||||||||||||| | | | |||||||||||||||||| ||||||||||||    
T  844036 gactaaacttgaaaggtcgcacttttatatggactaaaaacatatttaaccct 843984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 24093326 - 24093440
Alignment:
Q  18 ctgtgctccacaccggttctagcttattacacccggaaaaacatgtc-gtcattttcatacgaattttca-------aacatgcagtggtcactaccatg 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||       ||||||||  |||||||||||||    
T  24093326 ctgtgctccacaccggttctagcttattacaaccggaaaaacatgtcagtcattttcatacgaattttcagataattaacatgcaacggtcactaccatg 24093425  T
Q  110 aaacctgttgcccct 124  Q
    ||||| |||||||||    
T  24093426 aaaccagttgcccct 24093440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 19343700 - 19343790
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttatat 363  Q
    |||||||| |||||||| ||||||| ||||||||| |||||||||||||| |||| || ||   ||||||||||||||||||||||||||||    
T  19343700 cctccaaactagtccttataaaatgcaaatagggactaaaagtgaataaattttt-tgcagggcctaaacttgaaagcttgtaattttatat 19343790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 385
Target Start/End: Original strand, 38948658 - 38948783
Alignment:
Q  261 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 360  Q
    |||||||||||  || || ||||||||| | ||||||  |||||||||  ||||||||||||  ||||||  ||||||||||||||| |||||||||||     
T  38948658 ggacacttttagtccacccaaatagtccctataaaattcaaatagggaccaaaagtgaataatgttttgtatagactaaacttgaaaacttgtaattttg 38948757  T
Q  361 tatggactaaaaa-atatttaaccct 385  Q
    ||   |||||||| ||||||||||||    
T  38948758 tagaaactaaaaacatatttaaccct 38948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 5459167 - 5459047
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatat 363  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||||||||| ||||| ||||  ||||   |||||||||| ||| ||| ||||||||||     
T  5459167 acttttattcctccaaaatagtccctataaaatgcaaatagggattaaaaatgaataaaaaaattgtagggactaaacttaaaaacttataattttatag 5459068  T
Q  364 ggactaaaaa-atatttaacc 383  Q
     ||||||||| ||||||||||    
T  5459067 agactaaaaacatatttaacc 5459047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 26724251 - 26724314
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 328  Q
    |||||||  ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||    
T  26724251 acttttagtcctccaaaatagtccttataaaatgaaaatagagactaaaagtgaataaattttt 26724314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 16089824 - 16089921
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttat 361  Q
    |||||||  |||| |||||||||| | ||||||| ||||| ||| ||||||||||| |||| ||||| | |||||||| |||||| ||||||||||||    
T  16089824 acttttagtcctctaaaatagtccctataaaatgcaaatatggactaaaagtgaataaaaaatttgtaaggactaaacgtgaaagtttgtaattttat 16089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 385
Target Start/End: Complemental strand, 22860948 - 22860871
Alignment:
Q  310 taaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 385  Q
    ||||||||||||||| |||||| || ||||||||| ||||||||||||||| || |||||||||| | ||||||||||    
T  22860948 taaaagtgaataaaagttttgtaaaaactaaactttaaagcttgtaattttgtagggactaaaaacacatttaaccct 22860871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 381
Target Start/End: Original strand, 1298845 - 1298951
Alignment:
Q  279 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa---attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-a 374  Q
    |||||||||| | ||||||| ||||||||| ||||||||||||||    ||||||   ||||||| || ||||||||||||||| || |||||||||| |    
T  1298845 aaaatagtccctataaaatgcaaatagggactaaaagtgaataaattttttttgtagggactaaatttaaaagcttgtaattttgtagggactaaaaaca 1298944  T
Q  375 tatttaa 381  Q
    |||||||    
T  1298945 tatttaa 1298951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 383
Target Start/End: Original strand, 3746826 - 3746943
Alignment:
Q  267 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatgga 366  Q
    |||||| ||||||||| ||||| | ||||||| |||||  ||||| ||||||||||| ||||||  ||||||||||| ||   || ||| ||| |||| |    
T  3746826 ttttaatcctccaaaacagtccctataaaatgtaaatatagattataagtgaataaatttttgtagagactaaacttaaatagttataactttgtatgaa 3746925  T
Q  367 ctaaaaa-atatttaacc 383  Q
    ||||||| ||||||||||    
T  3746926 ctaaaaacatatttaacc 3746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 35270847 - 35270932
Alignment:
Q  300 aaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa-aaatatttaaccc 384  Q
    |||||||||||||||||||||||| |||| |   ||||||||||||||| || ||||||| || | |||||| | |||||||||||    
T  35270847 aaatagggattaaaagtgaataaatttttatagggactaaacttgaaagtttttaattttgtaggaactaaagacatatttaaccc 35270932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 383
Target Start/End: Complemental strand, 39057200 - 39057091
Alignment:
Q  276 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa- 373  Q
    |||||||||||||   ||||||| ||||| ||||||||||||||||||  ||||||  |||| |||||| |||  |||||||||| ||  |||||||||     
T  39057200 tccaaaatagtcccaataaaatgtaaataaggattaaaagtgaataaattttttgtagagaccaaacttaaaaatttgtaattttgtagagactaaaaat 39057101  T
Q  374 atatttaacc 383  Q
    ||||||||||    
T  39057100 atatttaacc 39057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 385
Target Start/End: Original strand, 15070070 - 15070180
Alignment:
Q  278 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaa--gactaaacttgaaagcttgtaattttatatggactaaaaa-a 374  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||||| |||| || |  |||||||||| |||  |||||||||| ||  ||||||||| |    
T  15070070 caaaatagtctctataaaatgtaaatagggactaaaagtgaataaatttttttgtagggactaaacttaaaaatttgtaattttttagagactaaaaata 15070169  T
Q  375 tatttaaccct 385  Q
    |||||| ||||    
T  15070170 tatttatccct 15070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 35529755 - 35529832
Alignment:
Q  310 taaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacccta 386  Q
    ||||||||||||||||||| ||| | |||||||||||||  | || |||||||| |||||||||| |||||||||||||    
T  35529755 taaaagtgaataaaatttt-tgagggactaaacttgaaacgtcgtgattttatagggactaaaaacatatttaacccta 35529832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 36235902 - 36235952
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa 324  Q
    ||||||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  36235902 cctccaaaatagtccttataaaatgcaaataaggactaaaaatgaataaaa 36235952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 292 - 385
Target Start/End: Original strand, 8794739 - 8794832
Alignment:
Q  292 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 385  Q
    ||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  8794739 taaaatgcaaatagggactaaaagtgaataaaatttt-tgtagactaaacttgaaagcttgcaattttatagggactaaaaacatatttaaccct 8794832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 27694516 - 27694423
Alignment:
Q  292 taaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacc 383  Q
    |||||||  ||||||||||||||||||||||| |||| ||  ||| |||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  27694516 taaaatgtgaatagggattaaaagtgaataaattttttgtagagattaaacttgaaaatttgtaattttatagggactaaaaacatatttaacc 27694423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 387
Target Start/End: Complemental strand, 24490577 - 24490454
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 364  Q
    |||||||  |||| |||||||||  | ||||||| ||||||||| |||||||||||||  |||| | |  ||||||||| |||||||||||||||| | |    
T  24490577 acttttagtcctctaaaatagtctctataaaatgcaaatagggactaaaagtgaataattttttttaagaactaaacttaaaagcttgtaattttacagg 24490478  T
Q  365 gactaaaaa-atatttaaccctat 387  Q
     ||||||||  |||||||||||||    
T  24490477 aactaaaaacgtatttaaccctat 24490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 373
Target Start/End: Complemental strand, 30641044 - 30640945
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  ||    ||| |||||||||||||||| ||||| ||| ||| ||||||    
T  30641044 cctccaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaaacatttccgagattaaacttgaaagcttgaaatttaatagggattaaaaa 30640945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 31994756 - 31994657
Alignment:
Q  261 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 359  Q
    |||||||| ||| ||||||||||||||| | ||||||| |||| |||||||||| ||||||||  ||||||  ||| || |||| |||||||||||||||    
T  31994756 ggacacttgtaatcctccaaaatagtccctataaaatgcaaattgggattaaaaatgaataaattttttgtagagattatacttaaaagcttgtaatttt 31994657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 39293131 - 39293083
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa 322  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  39293131 cctccaaaatagtccatataaaatgaaaatagggactaaaagtgaataa 39293083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 362
Target Start/End: Original strand, 34904164 - 34904247
Alignment:
Q  279 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttata 362  Q
    |||||||||||| ||||||| ||||||||| |||| |  |||||  |||| ||| | ||||||||||||||||||||||||||||    
T  34904164 aaaatagtccttttaaaatgcaaatagggactaaatgcaaataagttttt-tgatggactaaacttgaaagcttgtaattttata 34904247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 358
Target Start/End: Complemental strand, 29242573 - 29242495
Alignment:
Q  281 aatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 358  Q
    |||||||| | ||||||| ||||||||  |||||||||||||  |||| || | |||||||||| ||||||||||||||    
T  29242573 aatagtccctataaaatgcaaataggggctaaaagtgaataatttttttgtaaggactaaacttaaaagcttgtaattt 29242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 384
Target Start/End: Complemental strand, 10467516 - 10467391
Alignment:
Q  261 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 359  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||||||| ||||| ||||||||  |||||| | ||||||||||||||||||||||||||    
T  10467516 ggacacttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaaatgaataaattttttgtaaggactaaacttgaaagcttgtaatttt 10467417  T
Q  360 atatggac-taaaaaatatttaaccc 384  Q
     || |||| ||||| |||||||||||    
T  10467416 ttagggacttaaaatatatttaaccc 10467391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 386
Target Start/End: Complemental strand, 26938899 - 26938772
Alignment:
Q  261 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 359  Q
    |||||||||||  ||| ||||||||||| | ||||||| ||||||||| ||||||||||||||  ||||||   |||||||| | |||||||||||||||    
T  26938899 ggacacttttagtccttcaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaattttttgtagggactaaacataaaagcttgtaatttt 26938800  T
Q  360 atatggactaaaaa-atatttaacccta 386  Q
     || |||||||||| |||||||||||||    
T  26938799 gtagggactaaaaacatatttaacccta 26938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 276 - 373
Target Start/End: Original strand, 16483918 - 16484016
Alignment:
Q  276 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    ||||||||||||  ||||||||| ||||||| | |||||||||||| ||||||   ||| ||||||||||||| |||||||||||||| ||||||||||    
T  16483918 tccaaaatagtctctgtaaaatgcaaataggaactaaaagtgaatacaatttttataaggactaaacttgaaaacttgtaattttatagggactaaaaa 16484016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 382
Target Start/End: Complemental strand, 42024017 - 42023896
Alignment:
Q  263 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttat 361  Q
    |||||||||  ||||||||||||||| | ||||| | ||||||||| ||||| |||||||||||||   | | |||||||||||||| |||||||||| |    
T  42024017 acacttttagtcctccaaaatagtccatataaaaagcaaatagggactaaaaatgaataaaatttttgtatgtactaaacttgaaagtttgtaattttgt 42023918  T
Q  362 atggactaaaaa-atatttaac 382  Q
    | |||||||||| |||||||||    
T  42023917 agggactaaaaacatatttaac 42023896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 39344718 - 39344841
Alignment:
Q  261 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 359  Q
    |||||||||||  ||||||||||||||  | ||||||| ||||||||| ||||||||||||||  |||| |  |||| |||||| |||||||||||||||    
T  39344718 ggacacttttagtcctccaaaatagtctctataaaatgtaaatagggactaaaagtgaataaattttttctagagaccaaacttaaaagcttgtaatttt 39344817  T
Q  360 atatggactaaaaa-atatttaac 382  Q
      | |||||||||| |||||||||    
T  39344818 gcagggactaaaaacatatttaac 39344841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 32797081 - 32797136
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttg 329  Q
    ||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||    
T  32797081 cctccaaaatagtccttataaaatgcaattagggactaaaagtgaataaaattttg 32797136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 12597002 - 12597087
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattt 358  Q
    ||||||||||||||| | ||||||| ||||||||| |||| |||||| |||| |||||   ||||| |||||||||||||||||||    
T  12597002 cctccaaaatagtccctataaaatgcaaatagggactaaacgtgaataaaaaatttgtagggactatacttgaaagcttgtaattt 12597087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 26938587 - 26938533
Alignment:
Q  334 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccctat 387  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||||||||||||    
T  26938587 gactaaacttaaaagcttgtaattttgtagggactaaaaacatatttaaccctat 26938533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 383
Target Start/End: Complemental strand, 35055049 - 35054939
Alignment:
Q  275 ctccaaaatagtccttgtaaaa-tgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggact-aaaa 372  Q
    |||||||||||||| | ||||| || || || ||| ||||| |||||||| ||||||    ||||||||||||| ||||||||||| || ||||| ||||    
T  35055049 ctccaaaatagtccctataaaaatgcaattaaggactaaaaatgaataaatttttgtaggaactaaacttgaaaacttgtaattttgtaaggactgaaaa 35054950  T
Q  373 aatatttaacc 383  Q
     ||||||||||    
T  35054949 catatttaacc 35054939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 265 - 384
Target Start/End: Complemental strand, 13009393 - 13009272
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatat 363  Q
    |||||||  |||||||| |||||| ||||||||| |||||| ||||||  |||||||||| ||||||   |||||||||||||||||||||||||||||     
T  13009393 acttttagtcctccaaattagtccctgtaaaatgtaaatagagattaattgtgaataaaacttttgtagggactaaacttgaaagcttgtaattttatag 13009294  T
Q  364 ggactaaaaa-atatttaaccc 384  Q
    |||||||||| |||||||||||    
T  13009293 ggactaaaaatatatttaaccc 13009272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 27567684 - 27567569
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 372  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||| |||| |||| |   |||||||||||||| ||||||||||| || ||  |||||    
T  27567684 cctccaaaatagtccttataaaatgcaaatatggattaaaagtgaagaaaacttttttagggactaaacttgaaaacttgtaattttgtaggggttaaaa 27567585  T
Q  373 a-atatttaaccctat 387  Q
    | ||||||||||||||    
T  27567584 acatatttaaccctat 27567569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 28098679 - 28098777
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa 371  Q
    ||||||||||||||| | ||||||| ||||||||| ||||||| |||||   |||||| || ||||||||| ||| |||||||||||||| | ||||||    
T  28098679 cctccaaaatagtccctataaaatgcaaatagggactaaaagtaaataatttttttgtaaaaactaaacttaaaaccttgtaattttataggaactaaa 28098777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 22485185 - 22485092
Alignment:
Q  280 aaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    ||||||||||| ||||||| ||||||||| ||||||| ||||||| |||||   |||||||||| | |||| ||||||||  | ||||||||||    
T  22485185 aaatagtccttataaaatgcaaatagggactaaaagtaaataaaaatttgtacggactaaacttaagagctggtaattttggagggactaaaaa 22485092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 373
Target Start/End: Complemental strand, 30851917 - 30851817
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatggactaaaa 372  Q
    |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| |||||||||    
T  30851917 cctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataaggactaaaa 30851818  T
Q  373 a 373  Q
    |    
T  30851817 a 30851817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 381
Target Start/End: Original strand, 11297898 - 11298014
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 364  Q
    |||||||  ||||||||||||||| | ||||||  |||||||||  ||||||||  ||||  ||  || ||||||||||||||||||||||||| ||| |    
T  11297898 acttttagtcctccaaaatagtccctttaaaatacaaatagggacaaaaagtgataaaaaaattccga-gactaaacttgaaagcttgtaatttaatagg 11297996  T
Q  365 gactaaaaa-atatttaa 381  Q
    || |||||| ||||||||    
T  11297997 gattaaaaacatatttaa 11298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 373
Target Start/End: Original strand, 20132202 - 20132302
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 372  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||||| |  ||||||  | |||||||||||||||||| | |||||||    
T  20132202 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttgtaagaactaaatgtcaaagcttgtaattttataggaactaaaa 20132301  T
Q  373 a 373  Q
    |    
T  20132302 a 20132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 30851627 - 30851547
Alignment:
Q  303 tagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 381  Q
    |||||| ||||||||||||||  |||| |  |||||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  30851627 tagggactaaaagtgaataaatgttttatagagactaaacttgaaaatttgtaattttataaggactaaaaacatatttaa 30851547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 34471378 - 34471486
Alignment:
Q  278 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaata-aaattttgtgaagactaaacttgaaagcttgtaattttatatggacta-aaaaat 375  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||| |  ||||||  ||| ||||||| ||||||| ||||||| || |||||| ||| ||    
T  34471378 caaaatagtctctataaaatgcaaatagggactaaaagtgaatacattttttgtagagattaaactttaaagcttataattttgtaaggactagaaacat 34471477  T
Q  376 atttaaccc 384  Q
    |||||||||    
T  34471478 atttaaccc 34471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 25411505 - 25411457
Alignment:
Q  334 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 381  Q
    |||||||||||||||||| |||||||| | |||||||||| ||||||||    
T  25411505 gactaaacttgaaagcttctaattttacagggactaaaaacatatttaa 25411457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 28565069 - 28564981
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 362  Q
    ||||||||||||| | | ||||||  ||||||| ||||||||| ||||||  ||||| ||||||||| || |||  || ||||||||||    
T  28565069 cctccaaaatagttcatataaaatacaaataggaattaaaagtaaataaatctttgtaaagactaaatttaaaaatttataattttata 28564981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 33991965 - 33992033
Alignment:
Q  275 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaactt 343  Q
    |||||||||| ||||| ||||||  ||||||||| |||| ||||||||||  || || |||||||||||    
T  33991965 ctccaaaatattccttataaaatacaaatagggactaaacgtgaataaaaaattttggagactaaactt 33992033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 387
Target Start/End: Original strand, 40391038 - 40391152
Alignment:
Q  275 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    |||||||||||||| | ||||||| ||||||||| ||||||||||| |||| |||||   |||||||||| ||| |||||||||||||| ||||||||||    
T  40391038 ctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaaatttgtagggactaaacttaaaaacttgtaattttatagggactaaaaa 40391137  T
Q  374 -atatttaaccctat 387  Q
     ||||||||||||||    
T  40391138 catatttaaccctat 40391152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 384
Target Start/End: Original strand, 15025924 - 15026036
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 372  Q
    ||||||||||||||||| ||||||  ||||||||| ||||| ||||||||| ||||||   |||||||||| |||| |||||||||| ||  ||||||||    
T  15025924 cctccaaaatagtccttataaaatataaatagggactaaaaatgaataaaatttttgtagggactaaacttaaaagtttgtaattttgtagtgactaaaa 15026023  T
Q  373 a-atatttaaccc 384  Q
    | |||||||||||    
T  15026024 acatatttaaccc 15026036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 385
Target Start/End: Original strand, 38377932 - 38378055
Alignment:
Q  263 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 362  Q
    |||||||||  ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  || | | ||||||| |||||| ||||| ||||| ||    
T  38377932 acacttttagtcctccaaaatagtccctataaaatgcaaatagggaataaaagtgaataaaaaattttaaggactaaatttgaaaacttgttattttgta 38378031  T
Q  363 tggac-taaaaaatatttaaccct 385  Q
     | || ||||| ||||||||||||    
T  38378032 agaacttaaaacatatttaaccct 38378055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 10574082 - 10574128
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat 320  Q
    ||||||||||||||| ||||||||| ||||||||| |||| ||||||    
T  10574082 cctccaaaatagtccctgtaaaatgcaaatagggactaaaggtgaat 10574128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 31049935 - 31049885
Alignment:
Q  333 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 382  Q
    |||||||||||||||| |||||||||| || |||||||||| |||||||||    
T  31049935 agactaaacttgaaagtttgtaattttgtaaggactaaaaacatatttaac 31049885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 6449655 - 6449606
Alignment:
Q  310 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 358  Q
    |||||||||||||| |||| || | |||||||||||||||||||||||||    
T  6449655 taaaagtgaataaattttttgtaaggactaaacttgaaagcttgtaattt 6449606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 48282889 - 48282965
Alignment:
Q  310 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 384  Q
    |||||||||||||| |||| ||   |||||||||||||||||| ||||| | || |||||||||| |||||||||||    
T  48282889 taaaagtgaataaattttttgtagggactaaacttgaaagcttttaattgtgtacggactaaaaatatatttaaccc 48282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 386
Target Start/End: Complemental strand, 16943 - 16830
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    |||| |||||||||| | ||||||  ||||||||| ||||||||||||||| ||||  | ||||||||||||||| | ||||||||||| ||||||||||    
T  16943 cctctaaaatagtccctataaaatacaaatagggactaaaagtgaataaaaatttggtaggactaaacttgaaagttggtaattttatagggactaaaaa 16844  T
Q  374 -atatttaacccta 386  Q
     |||||||||||||    
T  16843 catatttaacccta 16830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 39340908 - 39341032
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttata 362  Q
    |||||||  |||||||||||||| || ||||||||||||||  | |||||||||||||  |||| || |||  |||||||||||||||||||||||||||    
T  39340908 acttttagtcctccaaaatagtcattataaaatgaaaatagaaagtaaaagtgaataattttttttgtagagactaaacttgaaagcttgtaattttata 39341007  T
Q  363 tggactaaaaa-atatttaacccta 386  Q
     ||| |||||| |||||||||||||    
T  39341008 gggattaaaaacatatttaacccta 39341032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 265 - 362
Target Start/End: Complemental strand, 44446881 - 44446783
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttata 362  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||| ||||||||||| |||||||||| |  ||||||| ||||||||||||||||||||    
T  44446881 acttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaattttgtaagaactaaacgtgaaagcttgtaattttata 44446783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 34359483 - 34359592
Alignment:
Q  278 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaa-ttttatatggactaaaaa-a 374  Q
    ||||| ||||| | ||||||| ||||||| ||||||||||||||||| ||||||   |||||||||||||||||||||| ||||||| |||||||||| |    
T  34359483 caaaaaagtccctataaaatgtaaataggaattaaaagtgaataaaatttttgtagggactaaacttgaaagcttgtaatttttatagggactaaaaaca 34359582  T
Q  375 tatttaaccc 384  Q
    ||||||||||    
T  34359583 tatttaaccc 34359592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 385
Target Start/End: Original strand, 20315035 - 20315147
Alignment:
Q  275 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    ||||||||| |||| | ||||||| ||||||||| ||||||||||||||  |||| |  |||||||||||||||| |||||||||| ||  |||||||||    
T  20315035 ctccaaaattgtccctataaaatgtaaatagggactaaaagtgaataaattttttatagagactaaacttgaaagtttgtaattttgtagtgactaaaaa 20315134  T
Q  374 -atatttaaccct 385  Q
     ||||||||||||    
T  20315135 catatttaaccct 20315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 28769535 - 28769472
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 328  Q
    |||||||| ||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||    
T  28769535 acttttaatcctccaaaatagtccttataaaatgcaaataaggactaaaagtgaataaattttt 28769472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 383
Target Start/End: Original strand, 54783217 - 54783322
Alignment:
Q  279 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atat 377  Q
    |||||||||| ||||||||  ||||| ||||||||||  ||| |||  |||| | ||||| |||| ||||||||||||||| || |||||||||| ||||    
T  54783217 aaaatagtccctgtaaaattcaaataaggattaaaagcaaattaaaaattgtaaggactacacttaaaagcttgtaattttgtaaggactaaaaacatat 54783316  T
Q  378 ttaacc 383  Q
    ||||||    
T  54783317 ttaacc 54783322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 41544598 - 41544536
Alignment:
Q  261 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa 323  Q
    |||||||||||| | ||||||||||| | ||||||||| | ||||||| ||||||||||||||    
T  41544598 ggacacttttaatcttccaaaatagttcctgtaaaatgcatatagggactaaaagtgaataaa 41544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 44648251 - 44648301
Alignment:
Q  337 taaacttgaaagcttgtaattttatatggact-aaaaaatatttaacccta 386  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  44648251 taaacttgaaagtttgtaattttatagggactaaaaaaatatttaacccta 44648301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 383
Target Start/End: Complemental strand, 50334653 - 50334542
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 372  Q
    |||| |||||||||| | ||||||| ||||||| | ||||||||||||||  ||||||   ||||||| |||||| ||| |||||||| | ||| |||||    
T  50334653 cctctaaaatagtccctataaaatgcaaataggaactaaaagtgaataaattttttgtagggactaaatttgaaaacttataattttagaaggattaaaa 50334554  T
Q  373 a-atatttaacc 383  Q
    | ||||||||||    
T  50334553 acatatttaacc 50334542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 373
Target Start/End: Complemental strand, 16545430 - 16545330
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaa 372  Q
    |||||||||||||||||  |||||| |||| || | |||||||||||||| |||| ||  ||||||||||| ||| |||||||||||||| |||||||||    
T  16545430 cctccaaaatagtccttacaaaatgcaaattggtagtaaaagtgaataaattttttgtacagactaaacttaaaaacttgtaattttatagggactaaaa 16545331  T
Q  373 a 373  Q
    |    
T  16545330 a 16545330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 385
Target Start/End: Complemental strand, 33752979 - 33752867
Alignment:
Q  275 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatt-ttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    |||||||||||||| | ||||||| ||||| ||| |||||||||||||||   ||||   || |||||| ||||||||||||||||||| ||||||||||    
T  33752979 ctccaaaatagtccctataaaatgtaaataaggactaaaagtgaataaaaaaattgtagggattaaactggaaagcttgtaattttatagggactaaaaa 33752880  T
Q  374 -atatttaaccct 385  Q
     ||||||||||||    
T  33752879 catatttaaccct 33752867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 386
Target Start/End: Complemental strand, 23230894 - 23230789
Alignment:
Q  283 tagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atattta 380  Q
    |||||||| ||||||| | |||| || ||||||||||| ||||||||||   ||||||||||| ||  |||||||||| ||  ||||||||| |||||||    
T  23230894 tagtccttataaaatgtatatagtgactaaaagtgaataaaaattttgtagggactaaacttgtaaatttgtaattttgtagagactaaaaacatattta 23230795  T
Q  381 acccta 386  Q
    ||||||    
T  23230794 acccta 23230789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 359
Target Start/End: Original strand, 3891594 - 3891676
Alignment:
Q  278 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaat-tttgtgaagactaaacttgaaagcttgtaatttt 359  Q
    ||||||||||  | ||||||  ||||||||||||||||| ||||||||  ||||  ||| ||||||||||| |||||||||||    
T  3891594 caaaatagtctctataaaatacaaatagggattaaaagtaaataaaataattgtagagattaaacttgaaaacttgtaatttt 3891676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 382
Target Start/End: Complemental strand, 29307622 - 29307512
Alignment:
Q  274 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggac-taaa 371  Q
    ||||||||||||||| | ||||||| ||||||||| ||| ||| ||| |||| |||||   ||||||||||  ||  ||||||||||||| |||| ||||    
T  29307622 cctccaaaatagtccctataaaatgcaaatagggactaagagttaataaaaaatttgtagggactaaacttttaaaattgtaattttatagggacttaaa 29307523  T
Q  372 aaatatttaac 382  Q
    | |||||||||    
T  29307522 acatatttaac 29307512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 152186 - 152078
Alignment:
Q  278 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-at 375  Q
    ||||||||||  | ||||||| ||||| ||| ||||||||| ||||| |||||| ||||||||||||| |||| | ||||||| || |||||||||| ||    
T  152186 caaaatagtctctataaaatgcaaataaggactaaaagtgagtaaaacttttgtaaagactaaacttgtaagcctataattttgtagggactaaaaacat 152087  T
Q  376 atttaaccc 384  Q
    |||||||||    
T  152086 atttaaccc 152078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 253775 - 253680
Alignment:
Q  265 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaatttt 359  Q
    |||||||| ||||||||||||||| | ||||||| | |||| |||||||| |||||||   ||||||  |||||||| || |||||||||||||||    
T  253775 acttttaatcctccaaaatagtccctataaaatgcagatagagattaaaaatgaataatttttttgtagagactaaatttaaaagcttgtaatttt 253680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 7495 - 7414
Alignment:
Q  292 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 373  Q
    ||||||| ||||||||| ||||| |||||||||  || |  ||| |||||||||||||||||||||| ||| ||| ||||||    
T  7495 taaaatgcaaatagggactaaaaatgaataaaaaattttcgagattaaacttgaaagcttgtaatttaatagggattaaaaa 7414  T

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