View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10710_low_6 (Length: 388)

Name: NF10710_low_6
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10710_low_6
NF10710_low_6
[»] chr7 (1 HSPs)
chr7 (26-232)||(32548417-32548623)
[»] chr5 (2 HSPs)
chr5 (18-232)||(32944230-32944442)
chr5 (290-318)||(32944144-32944172)
[»] chr4 (2 HSPs)
chr4 (18-232)||(33370621-33370833)
chr4 (290-318)||(33370535-33370563)
[»] chr8 (2 HSPs)
chr8 (30-94)||(37562395-37562461)
chr8 (30-58)||(13934973-13935001)
[»] chr3 (2 HSPs)
chr3 (30-94)||(51421557-51421623)
chr3 (30-58)||(51420961-51420989)
[»] chr1 (2 HSPs)
chr1 (30-94)||(38931414-38931480)
chr1 (30-58)||(38932048-38932076)
[»] chr2 (1 HSPs)
chr2 (18-83)||(4386089-4386156)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 32548623 - 32548417
Alignment:
Q  26 attattttgtcactatcttccactaccatctctccttcataccatccaacccaccacccgcaacaccatcaaaatggttgtcccaactctccttcccttc 125  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32548623 attattttgtcactatcttccactaccatctctccttcataccaaccaacccaccaccagcaacaccatcaaaatggttgtcccaactctccttcccttc 32548524  T
Q  126 acatcaaaatcaaatccaaatcatgttaaaaccatgttacgaacatgttatgaacaatcatctctttaattattttcaccctaattgacagatgaaaaat 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32548523 acatcaaaatcaaatccaaatcatgttaaaaccatgttacgaacatgttatgaacaaccatctctttaattattttcaccctaattgacagatgaaaaat 32548424  T
Q  226 accaaac 232  Q
    |||||||    
T  32548423 accaaac 32548417  T

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Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 32944442 - 32944230
Alignment:
Q  18 aacactagattattttgtcactatcttccactaccatctctccttcataccatccaacccaccacccgcaacaccatcaaaatggttgtcccaactctcc 117  Q
    ||||||||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  32944442 aacactagattatt--gtcactatcttccactaccatctctcctccataccaaccaacccaccaccagcaacaccatcaaaatggttgtcccaactctcc 32944345  T
Q  118 ttcccttcacatcaaaatcaaatccaaatcatgttaaaaccatgttacgaacatgttatgaacaatcatctctttaattattttcaccctaattgacaga 217  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  32944344 ttcccttcacatcaaaatcaaatccaaatccagttaaaaccgtgttacgaacatgttatgaacaaccatctctttaattgttttcaccctaattgacaga 32944245  T
Q  218 tgaaaaataccaaac 232  Q
    |||||||||||||||    
T  32944244 tgaaaaataccaaac 32944230  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 32944172 - 32944144
Alignment:
Q  290 gtaacaaaaccccattctatattttacca 318  Q
    |||||||||||||||||||||||||||||    
T  32944172 gtaacaaaaccccattctatattttacca 32944144  T

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Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 33370833 - 33370621
Alignment:
Q  18 aacactagattattttgtcactatcttccactaccatctctccttcataccatccaacccaccacccgcaacaccatcaaaatggttgtcccaactctcc 117  Q
    ||||||||||||||  |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  33370833 aacactagattatt--gtcactatcttccactaccatctctcctccataccaaccaacccaccaccagcaacaccatcaaaatggttgtcccaactctcc 33370736  T
Q  118 ttcccttcacatcaaaatcaaatccaaatcatgttaaaaccatgttacgaacatgttatgaacaatcatctctttaattattttcaccctaattgacaga 217  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  33370735 ttcccttcacatcaaaatcaaatccaaatccagttaaaaccgtgttacgaacatgttatgaacaaccatctctttaattgttttcaccctaattgacaga 33370636  T
Q  218 tgaaaaataccaaac 232  Q
    |||||||||||||||    
T  33370635 tgaaaaataccaaac 33370621  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 33370563 - 33370535
Alignment:
Q  290 gtaacaaaaccccattctatattttacca 318  Q
    |||||||||||||||||||||||||||||    
T  33370563 gtaacaaaaccccattctatattttacca 33370535  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 37562395 - 37562461
Alignment:
Q  30 ttttgtcactatcttccactacca--tctctccttcataccatccaacccaccacccgcaacaccat 94  Q
    ||||||||||||||||||||||||  |||||||||||| ||  ||||||||||||| ||||||||||    
T  37562395 ttttgtcactatcttccactaccatctctctccttcatccccaccaacccaccaccagcaacaccat 37562461  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 13935001 - 13934973
Alignment:
Q  30 ttttgtcactatcttccactaccatctct 58  Q
    |||||||||||||||||||||||||||||    
T  13935001 ttttgtcactatcttccactaccatctct 13934973  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 51421623 - 51421557
Alignment:
Q  30 ttttgtcactatcttccactaccatc--tctccttcataccatccaacccaccacccgcaacaccat 94  Q
    ||||||||||||||||||||||||||  |||||||||| ||  ||||||||||||| ||||||||||    
T  51421623 ttttgtcactatcttccactaccatctctctccttcatccccaccaacccaccaccagcaacaccat 51421557  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 51420961 - 51420989
Alignment:
Q  30 ttttgtcactatcttccactaccatctct 58  Q
    |||||||||||||||||||||||||||||    
T  51420961 ttttgtcactatcttccactaccatctct 51420989  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 38931414 - 38931480
Alignment:
Q  30 ttttgtcactatcttccactacca--tctctccttcataccatccaacccaccacccgcaacaccat 94  Q
    ||||||||||||||||||||||||  |||||||||||| ||  ||||||||||||| ||||||||||    
T  38931414 ttttgtcactatcttccactaccatctctctccttcatccccaccaacccaccaccagcaacaccat 38931480  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 38932076 - 38932048
Alignment:
Q  30 ttttgtcactatcttccactaccatctct 58  Q
    |||||||||||||||||||||||||||||    
T  38932076 ttttgtcactatcttccactaccatctct 38932048  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 4386156 - 4386089
Alignment:
Q  18 aacactagattattttgtcactatcttccactaccat--ctctccttcataccatccaacccaccacc 83  Q
    ||||||||| | ||||||||||||||||||| |||||  ||||||||||| ||  |||||||| ||||    
T  4386156 aacactagaattttttgtcactatcttccacaaccatcactctccttcatccccaccaacccatcacc 4386089  T

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