View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_8 (Length: 373)
Name: NF10710_low_8
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 38165391 - 38165145
Alignment:
| Q |
25 |
tagcaattaacacttcgggaaacaatctctcgcgatacatatcttttcccctcattcaaatgatcgttcttgttctaaaagtatttgtttcgtgtatttc |
124 |
Q |
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| T |
38165391 |
tagcaattaacacttcgggaaacaatctctcgcgatacatatcttttcccctcattcaaatgatcgttcttgttctaaaagtatttgtttcgtgtatttc |
38165292 |
T |
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| Q |
125 |
gtgatcaaattccttcattcgtacaaaagagtctaattataccattgagatttgagagaacttcctccaacctcatttccnnnnnnnctacacatgactt |
224 |
Q |
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| T |
38165291 |
gtgatcaaattcgttcattcgtacaaaagagtctaattataccatt-------gagagaacttcctccaacctcatttccaaaaaaactacacatgactt |
38165199 |
T |
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| Q |
225 |
tagaaatttattttgtgatgctctaattcgttctctaaatgggataaaatatgt |
278 |
Q |
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| T |
38165198 |
tagaaatttattttgtgattctctaattcgttctctaaatgggataaaatatgt |
38165145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 38165119 - 38165044
Alignment:
| Q |
288 |
ctcaaatttctgagggtgtttaaattttctccttatttcatgacatcattctttgatgcaacatggattacctatg |
363 |
Q |
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| T |
38165119 |
ctcaaatttctacgggtgtttaaattttctccttatttcatgacatcattctttgatgcaacatggattacctatg |
38165044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 38939350 - 38939301
Alignment:
| Q |
25 |
tagcaattaacacttcgggaaacaatctctcgcgatacatatcttttccc |
74 |
Q |
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| T |
38939350 |
tagcaattaacacttcgggaaacaatctctcgcgatacatatcttttccc |
38939301 |
T |
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