View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10710_low_9 (Length: 363)
Name: NF10710_low_9
Description: NF10710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10710_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 7028328 - 7028006
Alignment:
| Q |
18 |
ctatgaagaaaattacatggcagcttaatttgggaactgtgagaggagaattatgagatgcgctcagctcctgtttcaacgatctcctccacagacgcga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7028328 |
ctatgaagaaaattacatggcagcttaatttgggaactgtgagaggagaactaagaggtgcgcccagctcctgtttcaacgatctcctccacagacgcga |
7028229 |
T |
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| Q |
118 |
atcatcttcacaaaagccatccaaaatgttttccttattaattcctgagagacactgaagataagaaatagaagtttaacaatatgtcaaaaaattttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |
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| T |
7028228 |
atcatcttcacaaaagccatccaaaatgttttccttattaattcctgagagacactaaagataagaaatagaagtttaacaatatgtcaaacaaatttat |
7028129 |
T |
|
| Q |
218 |
tgtagctgaaaaacaagagataactgaagggattatcattatcgtaactagaatgcaaacaagcatttccactttttcccgtctctcatttctcttccaa |
317 |
Q |
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| T |
7028128 |
tgaagctgaaaaacaagagataattgaagggattatcattatcgtaactagaatgcaaacaagcatttccactttttcccgtctctcatttctcttccat |
7028029 |
T |
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| Q |
318 |
cttctgtggctatgtctgtgtat |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
7028028 |
cttctgtggctatgtctgtgtat |
7028006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 7021608 - 7021404
Alignment:
| Q |
26 |
aaaattacatggcagcttaatttgggaactgtgagaggagaattatgagatgcgctcagctcctgtttcaacgatctcctccacagacgcgaatcatctt |
125 |
Q |
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|||||||||| |||||||| | |||||||||||| ||||| || | |||| | |||||||| || |||| | |||||||| | ||||| |||||||| |
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| T |
7021608 |
aaaattacatagcagcttatctcaggaactgtgagatgagaactaagggatgggatcagctcccgtgtcaaaggtctcctccgccgacgcatatcatctt |
7021509 |
T |
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| Q |
126 |
cacaaaagccatccaaaatgttttccttattaattcctgagagacactgaagataagaaatagaagtttaacaatatgtcaaaaaattttattgtagctg |
225 |
Q |
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|||| |||| |||||| ||||| ||| |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || | |||| ||||| |
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| T |
7021508 |
cacataagctatccaatatgttgtccatattaattcctgagagtaactgaagttaagaaataaaagtttaacaatatgtcaaacaaaatcattgaagctg |
7021409 |
T |
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| Q |
226 |
aaaaa |
230 |
Q |
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||||| |
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| T |
7021408 |
aaaaa |
7021404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 7047896 - 7047737
Alignment:
| Q |
26 |
aaaattacatggcagcttaatttgggaactgtgagaggagaattatgagatgcgctcagctcctgtttcaacgatctcctccacagacgcgaatcatctt |
125 |
Q |
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|||||||| |||||||||||| ||| ||||||||| ||||| || |||| || |||||||||| |||| ||||| ||||||| |||| ||||||||| |
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| T |
7047896 |
aaaattactcggcagcttaattcggggactgtgagacgagaactaagagacgcattcagctcctgagtcaaagatcttctccacatacgcaaatcatctt |
7047797 |
T |
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| Q |
126 |
cacaaaagccatccaaaatgttttccttattaattcctgagagacactgaagataagaaa |
185 |
Q |
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||||| || | |||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
7047796 |
tacaaatgctagccaaaatgttgaacttgttaattcctgagagacactgaagataagaaa |
7047737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 7056775 - 7056608
Alignment:
| Q |
18 |
ctatgaagaaaattacatggcagcttaatttgggaactgtgagaggagaattatgagatgcgctcagctcctgtttcaacgatctcctccacagacgcga |
117 |
Q |
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||||||| |||||||| |||| ||||||| ||| ||||||||| |||||||| |||| || |||||||||| |||| ||||||||||||| | || | |
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| T |
7056775 |
ctatgaaaaaaattactcggcatcttaattcggggactgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaa |
7056676 |
T |
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| Q |
118 |
atcatcttcacaaaagccatccaaaatgttttccttattaattcctgagagacactgaagataagaaa |
185 |
Q |
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||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||||| |||| |
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| T |
7056675 |
atcatcttcacaaaagctacccacaatgttgaacaaattaattcctgagagacactgaagatatgaaa |
7056608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 7021120 - 7021025
Alignment:
| Q |
237 |
ataactgaagggattatcattatcgtaactagaatgcaaacaagcatttccactttttcccgtctctcatttctcttccaacttctgtggctatgt |
332 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||| ||||||| ||||| ||||||||| |
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| T |
7021120 |
ataactgaagggattatcattatcataactagaatgcaaacaagcatttcagcttttcaccgtctatcatttttcttccatcttctctggctatgt |
7021025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 7014701 - 7014519
Alignment:
| Q |
21 |
tgaagaaaattacatggcagcttaatttgggaactgtgagaggagaattatgagatgcgctcagctcctgtttcaacgatctcctccacagacgcgaatc |
120 |
Q |
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|||| |||||||| ||||||||||||| ||| ||| ||||| ||||| || |||| ||| |||||| |||| ||||| ||||| ||| ||| ||| |
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| T |
7014701 |
tgaaaaaaattacttggcagcttaattcgggcactttgagatgagaactaggagaactcttcaactcctgaatcaatgatcttctccagagatgcggatc |
7014602 |
T |
|
| Q |
121 |
atcttcacaaaagccatccaaaatgttttccttattaattcctgagagacactgaagataagaaatagaagtttaacaatatg |
203 |
Q |
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|||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
7014601 |
atcttcacaatagctatccaaaatgttgaatgtattaattcctgagagacactgcagataagaaataatagtttaagaatatg |
7014519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 7056601 - 7056511
Alignment:
| Q |
244 |
aagggattatcattatcgtaactagaatgcaaacaagcatttccactttttcccgtctctcatttctcttccaacttctgtggctatgtct |
334 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| ||||||||| |
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| T |
7056601 |
aagggtttatcattatcataactagaatgcaaacaagcatttctgctttttcccgtttctcatttctcttccgtcttatgtagctatgtct |
7056511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 7004977 - 7004820
Alignment:
| Q |
28 |
aattacatggcagcttaatttgggaactgtgagaggagaattatgagatgcgctcagctcctgtttcaacgatctcctccacagacgcgaatcatcttca |
127 |
Q |
| |
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|||||| | ||| ||||||| || ||||||||| ||||| || ||||| || |||||||||| |||| ||||||||||||||| || ||||||||| |
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| T |
7004977 |
aattactttgcaacttaattcagggactgtgagacgagaactaagagattcgttcagctcctgagtcaaagatctcctccacagatgctcgtcatcttca |
7004878 |
T |
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| Q |
128 |
caaaagccatccaaaatgttttccttattaattcctgagagacactgaagataagaaa |
185 |
Q |
| |
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||| || |||||||||||| || ||||||| |||||||||||||||||||||||| |
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| T |
7004877 |
caattgctatccaaaatgttgaactcattaattgctgagagacactgaagataagaaa |
7004820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 7047731 - 7047664
Alignment:
| Q |
243 |
gaagggattatcattatcgtaactagaatgcaaacaagcatttccactttttcccgtctctcatttct |
310 |
Q |
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|||||| ||||||||||| |||||||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
7047731 |
gaagggtttatcattatcataactagaatgcaaactagcatttctgccttttcccgtctctcatttct |
7047664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 7040700 - 7040606
Alignment:
| Q |
93 |
tcaacgatctcctccacagacgcgaatcatcttcacaaaagccatccaaaatgttttccttattaattcctgagagacactgaagataagaaata |
187 |
Q |
| |
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|||| ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| || ||||||||||| |||||| |
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| T |
7040700 |
tcaatgatctcctccagagatgcgaatcatcttcacaatagctatccaaaatgttgaatgtattaattcctgaaaggcactgaagatacgaaata |
7040606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 6995177 - 6995124
Alignment:
| Q |
93 |
tcaacgatctcctccacagacgcgaatcatcttcacaaaagccatccaaaatgt |
146 |
Q |
| |
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|||| ||||| ||||||| ||||| |||||| |||||||||| ||||||||||| |
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| T |
6995177 |
tcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgt |
6995124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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