View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10711_high_5 (Length: 353)

Name: NF10711_high_5
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10711_high_5
NF10711_high_5
[»] chr5 (12 HSPs)
chr5 (16-343)||(33763474-33763801)
chr5 (230-343)||(33867285-33867399)
chr5 (248-343)||(33904848-33904943)
chr5 (263-343)||(33698933-33699013)
chr5 (248-343)||(33736436-33736531)
chr5 (263-343)||(33823157-33823237)
chr5 (16-99)||(33734644-33734731)
chr5 (227-336)||(33750156-33750264)
chr5 (249-343)||(33680385-33680479)
chr5 (16-55)||(33821911-33821950)
chr5 (16-54)||(33867142-33867180)
chr5 (16-60)||(33904703-33904747)
[»] scaffold0001 (1 HSPs)
scaffold0001 (249-343)||(149251-149345)
[»] chr7 (2 HSPs)
chr7 (250-343)||(5468536-5468629)
chr7 (16-62)||(5470116-5470161)
[»] scaffold0023 (1 HSPs)
scaffold0023 (226-343)||(88896-89013)
[»] chr8 (2 HSPs)
chr8 (256-326)||(21306322-21306392)
chr8 (16-48)||(21306145-21306177)
[»] scaffold0193 (1 HSPs)
scaffold0193 (227-343)||(23305-23420)
[»] scaffold0247 (2 HSPs)
scaffold0247 (227-343)||(19857-19972)
scaffold0247 (16-54)||(21868-21906)


Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 33763474 - 33763801
Alignment:
Q  16 atctacaactttttcggcatctattcaatcctgccaagtgtaacaaatacttttacaatatatatgtagaaatgaaattatgcatatgattaatttatga 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  33763474 atctacaactttttcggcatctactcaatcctgccaagtgtaacaaatactttaacaatatacatgtagaaatgaaattatgcatatgattaatttatga 33763573  T
Q  116 ttacttcaatagaatatagtagtgcacttttagatgtcactctttatgaacctagttcagaccttatatagttgttcagcttaactaattataagccaca 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |    
T  33763574 ttacttcaatagaatatagtagtgcacttttaaatgtcactctttataaacctagttcagaccttatatagttgttccgcttaactgattataagccaaa 33763673  T
Q  216 tacacaatatatagaataagcaacattcgttaatacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtag 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33763674 tacacaatatatagaataagcaacattcgttaatacctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtag 33763773  T
Q  316 cttatcttcctcatatgtccaggcacct 343  Q
    ||||||||||||||||||||||||||||    
T  33763774 cttatcttcctcatatgtccaggcacct 33763801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 33867285 - 33867399
Alignment:
Q  230 aataagcaacattcgtta-atacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctca 328  Q
    |||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||| |||||||||    
T  33867285 aataagcaactttcattatatacctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctca 33867384  T
Q  329 tatgtccaggcacct 343  Q
    |||||||| ||||||    
T  33867385 tatgtccatgcacct 33867399  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 33904848 - 33904943
Alignment:
Q  248 atacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 343  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||| ||||||||||||||||| ||||||    
T  33904848 atacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacct 33904943  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 33698933 - 33699013
Alignment:
Q  263 ggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 343  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||    
T  33698933 ggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcacct 33699013  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 33736436 - 33736531
Alignment:
Q  248 atacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 343  Q
    ||||||||||| || | |||||||||||||||||||||||||||||| |  || ||||||||||||||||| ||||||||||||||||| ||||||    
T  33736436 atacctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacct 33736531  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 263 - 343
Target Start/End: Original strand, 33823157 - 33823237
Alignment:
Q  263 ggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 343  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||||||||  || ||||||||||||||||| ||||||    
T  33823157 ggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgcacct 33823237  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33734644 - 33734731
Alignment:
Q  16 atctacaactttttcggcatctattcaatcctgccaagtgtaacaa--atacttttacaatatat--atgtagaaatgaaattatgca 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||  ||| ||| |||||||||  |||| ||||||||||||||||    
T  33734644 atctacaactttttcgacatctattcaatcctgccaagtgtaacaaatatagtttcacaatatatacatgtggaaatgaaattatgca 33734731  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 336
Target Start/End: Original strand, 33750156 - 33750264
Alignment:
Q  227 tagaataagcaacattcgttaatacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcct 326  Q
    ||||| |||||||||||  || |||||||||| |  |||| |||||||||||||||||||||||||||||||||  |||| ||||||| ||| |||||||    
T  33750156 tagaaaaagcaacattcacta-tacctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcct 33750254  T
Q  327 catatgtcca 336  Q
    || |||||||    
T  33750255 cagatgtcca 33750264  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 343
Target Start/End: Original strand, 33680385 - 33680479
Alignment:
Q  249 tacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 343  Q
    |||||||||| |  ||||||||||||||||| ||||||||||| || | ||| ||  |||||||||| || || |||||||||||||| ||||||    
T  33680385 tacctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcacct 33680479  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 33821911 - 33821950
Alignment:
Q  16 atctacaactttttcggcatctattcaatcctgccaagtg 55  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  33821911 atctacaactttttcgacatctattcaatcctgccaagtg 33821950  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 33867142 - 33867180
Alignment:
Q  16 atctacaactttttcggcatctattcaatcctgccaagt 54  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  33867142 atctacaacttttccggcacctattcaatcctgccaagt 33867180  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 33904703 - 33904747
Alignment:
Q  16 atctacaactttttcggcatctattcaatcctgccaagtgtaaca 60  Q
    ||||||| ||||||||||| ||||||||||||| || ||||||||    
T  33904703 atctacagctttttcggcacctattcaatcctgtcatgtgtaaca 33904747  T

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Target: scaffold0001 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 249 - 343
Target Start/End: Original strand, 149251 - 149345
Alignment:
Q  249 tacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 343  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  149251 tacctgctctttgaggaactaaatgccattttccttccccatacttgtcaatgcaagccttgagtagcttatcttcctcgtatgtccaggcacct 149345  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 250 - 343
Target Start/End: Complemental strand, 5468629 - 5468536
Alignment:
Q  250 acctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacct 343  Q
    ||||||||| || |||| |||||||||||||||||||||||||||||||||| ||||||||||||  || |||||||| |||||||| ||||||    
T  5468629 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagttgtcttcctcgtatgtccatgcacct 5468536  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 5470161 - 5470116
Alignment:
Q  16 atctacaactttttcggcatctattcaatcctgccaagtgtaacaaa 62  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||    
T  5470161 atctacaactttttcgacatctattcaatcctg-taagtgtaacaaa 5470116  T

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Target: scaffold0023 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 226 - 343
Target Start/End: Complemental strand, 89013 - 88896
Alignment:
Q  226 atagaataagcaacattcgttaatacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcc 325  Q
    ||||||||||||  ||||||  |||||||||||  | ||||||| |||||||||||||| |||||||||||||||||| ||||||||||  ||||||||     
T  89013 atagaataagcatgattcgtatatacctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttct 88914  T
Q  326 tcatatgtccaggcacct 343  Q
    ||||  ||||||| ||||    
T  88913 tcattcgtccaggtacct 88896  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 21306322 - 21306392
Alignment:
Q  256 tctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcct 326  Q
    |||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  21306322 tctctgaggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagtagctcatcttcct 21306392  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 21306145 - 21306177
Alignment:
Q  16 atctacaactttttcggcatctattcaatcctg 48  Q
    ||||||||||||||| |||||||||||||||||    
T  21306145 atctacaactttttctgcatctattcaatcctg 21306177  T

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Target: scaffold0193 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 343
Target Start/End: Complemental strand, 23420 - 23305
Alignment:
Q  227 tagaataagcaacattcgttaatacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcct 326  Q
    ||||||||| ||||||||||| |||||| ||| |  |||| |||||||||||||||| |||||| ||||  |||| ||||||||||    || ||||| |    
T  23420 tagaataaggaacattcgtta-tacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttctt 23322  T
Q  327 catatgtccaggcacct 343  Q
    |||||||||| ||||||    
T  23321 catatgtccatgcacct 23305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 343
Target Start/End: Complemental strand, 19972 - 19857
Alignment:
Q  227 tagaataagcaacattcgttaatacctgctctctgtggaactaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcct 326  Q
    ||||||||| ||||||| ||| |||||| ||| |  |||| |||||||||||||||| |||||| ||||  |||| ||||||||||    || ||||| |    
T  19972 tagaataaggaacattcttta-tacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttctt 19874  T
Q  327 catatgtccaggcacct 343  Q
    |||||||||| ||||||    
T  19873 catatgtccatgcacct 19857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 21906 - 21868
Alignment:
Q  16 atctacaactttttcggcatctattcaatcctgccaagt 54  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  21906 atctacaactttttcgacatctattcaatcctgtcaagt 21868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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